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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0122100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.06 (0.0157) R2 : 1.52e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00275 (0.0331) R2dN8 : 1.96e-05 R2N8 : 1.52e-05
σ : 0.296
deviance : 40.21
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
37.65 0.288 3.06 0.114 0.105 -0.211 -0.0547 -0.175 0.0117 6.85 1010 23 -- --
37.75 0.286 3.06 0.126 0.104 -0.206 -0.0312 -- 0.0139 6.9 1010 22 -- --
37.65 0.286 3.06 0.114 0.105 -0.211 -- -0.17 0.0119 6.98 1010 22 -- --
37.75 0.286 3.06 0.127 0.104 -0.206 -- -- 0.014 7.01 1010 22 -- --
38.22 0.288 3.06 0.117 -- -0.229 -- -0.163 0.014 -- 1010 22 -- --
39.02 0.293 3.06 0.116 0.125 -- -0.0416 -- 0.0136 7.26 -- -- -- --
39.02 0.293 3.06 0.115 0.125 -- -- -- 0.0137 7.35 -- -- -- --
38.31 0.288 3.06 0.129 -- -0.224 -- -- 0.0159 -- 1010 22 -- --
38.17 0.288 3.06 -- 0.106 -0.2 -- -- -3.49e-05 6.95 1010 22 -- --
39.85 0.295 3.06 0.117 -- -- -- -- 0.0158 -- -- -- -- --
39.37 0.294 3.06 -- 0.126 -- -- -- 0.000874 7.29 -- -- -- --
38.75 0.29 3.06 -- -- -0.218 -- -- 0.00179 -- 1010 22 -- --
40.21 0.296 3.06 -- -- -- -- -- 0.00275 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 36.57 radiation 10.0 10 > th dose independent rect. 17 14
2 36.58 radiation 10.0 10 > th dose dependent rect. 17 14
3 36.59 radiation 10.0 10 > th dose independent rect. 6 1
30 36.59 radiation 10.0 10 > th dose dependent rect. 6 1
57 36.81 atmosphere 1010.0 10 < th dose independent rect. 24 22
58 36.91 temperature 25.0 10 > th dose independent rect. 23 7
59 36.96 atmosphere 1010.0 10 < th dose independent rect. 3 12
61 37.02 atmosphere 1010.0 10 < th dose independent sin 5 NA
62 37.02 temperature 25.0 10 > th dose dependent rect. 5 1
64 37.05 temperature 25.0 10 > th dose independent rect. 5 1
65 37.06 atmosphere 1010.0 10 < th dose independent rect. 3 19
70 37.13 atmosphere 1010.0 10 < th dose independent rect. 24 9
72 37.15 atmosphere 1010.0 10 < th dose independent rect. 3 14
73 37.15 atmosphere 1010.0 10 < th dose independent rect. 3 17
79 37.21 atmosphere 1010.0 10 < th dose independent rect. 24 13
80 37.21 atmosphere 1010.0 10 < th dose independent rect. 24 15
82 37.24 atmosphere 1010.0 10 < th dose independent rect. 11 23
100 37.36 wind 1.0 10 < th dose independent rect. 6 1
104 37.37 temperature 25.0 90 > th dose independent rect. 22 1
124 37.39 atmosphere 1010.0 10 < th dose independent rect. 24 17
152 37.48 atmosphere 1010.0 10 < th dose independent rect. 3 23
161 37.52 temperature 25.0 10 > th dose independent rect. 22 2
163 37.52 temperature 25.0 720 > th dose dependent rect. 23 9
173 37.57 temperature 20.0 10 > th dose dependent rect. 22 2
174 37.57 radiation 10.0 30 < th dose dependent rect. 3 7
177 37.58 atmosphere 1010.0 10 < th dose independent rect. 3 6
187 37.60 radiation 10.0 30 < th dose dependent rect. 3 5
197 37.63 radiation 1.0 30 < th dose independent rect. 3 5
208 37.65 temperature 25.0 720 > th dose independent rect. 23 10
209 37.65 atmosphere 1010.0 270 < th dose independent rect. 8 11
210 37.65 radiation 10.0 30 < th dose dependent rect. 24 9
220 37.67 radiation 10.0 10 < th dose dependent rect. 3 3
222 37.68 atmosphere 1010.0 10 < th dose independent no NA NA
223 37.68 atmosphere 1010.0 270 < th dose independent rect. 24 13
238 37.71 atmosphere 1010.0 10 < th dose independent rect. 24 7
246 37.73 temperature 25.0 90 < th dose independent rect. 6 1
250 37.73 atmosphere 1010.0 90 < th dose independent rect. 11 10
259 37.74 wind 3.0 10 < th dose dependent rect. 6 1
261 37.75 radiation 1.0 30 < th dose independent rect. 3 3
267 37.75 temperature 15.0 90 > th dose independent rect. 5 22
279 37.77 temperature 25.0 10 > th dose independent sin 8 NA
281 37.77 wind 1.0 90 > th dose independent rect. 3 2
291 37.78 temperature 25.0 10 > th dose independent rect. 22 13
307 37.79 temperature 25.0 10 < th dose independent rect. 3 3
316 37.79 precipitation 0.1 90 < th dose independent rect. 5 22
317 37.79 radiation 10.0 30 < th dose dependent sin 6 NA
320 37.79 radiation 10.0 10 < th dose dependent rect. 24 6
323 37.79 precipitation 0.1 90 < th dose dependent rect. 5 22
324 37.80 temperature 20.0 90 > th dose independent rect. 3 2
326 37.80 temperature 10.0 90 > th dose dependent rect. 3 2
328 37.81 wind 7.0 90 < th dose independent rect. 3 2
330 37.81 temperature 10.0 90 > th dose independent rect. 3 2
332 37.81 temperature 30.0 90 < th dose independent rect. 3 2
333 37.81 humidity 50.0 90 > th dose independent rect. 3 2
336 37.81 atmosphere 995.0 90 > th dose independent rect. 3 2
337 37.81 atmosphere 1010.0 90 < th dose independent rect. 3 2
348 37.81 atmosphere 995.0 90 > th dose independent rect. 23 23
350 37.81 radiation 1.0 90 < th dose dependent sin 3 NA
368 37.82 wind 9.0 90 < th dose independent rect. 5 22
374 37.83 temperature 25.0 90 > th dose independent rect. 23 10
382 37.83 humidity 50.0 90 > th dose dependent rect. 3 2
388 37.84 wind 1.0 90 > th dose independent rect. 22 1
395 37.84 atmosphere 1015.0 90 < th dose independent rect. 5 22
403 37.85 precipitation 0.1 90 < th dose independent rect. 3 2
410 37.85 precipitation 0.1 90 < th dose dependent rect. 3 2
419 37.86 radiation 10.0 30 < th dose independent rect. 24 8
425 37.86 humidity 50.0 270 > th dose independent rect. 24 13
428 37.86 humidity 80.0 4320 < th dose dependent rect. 4 1
436 37.86 radiation 10.0 30 < th dose dependent rect. 23 23
437 37.87 radiation 1.0 30 < th dose independent sin 3 NA
450 37.87 atmosphere 1015.0 90 < th dose dependent rect. 3 2
467 37.88 radiation 10.0 10 < th dose dependent rect. 6 1
474 37.89 radiation 10.0 30 > th dose independent sin 10 NA
481 37.89 atmosphere 1010.0 10 < th dose independent rect. 21 23
483 37.89 wind 9.0 90 < th dose dependent rect. 3 2
508 37.90 atmosphere 1010.0 10 < th dose independent rect. 8 23
524 37.91 atmosphere 1010.0 10 < th dose independent rect. 3 4
542 37.91 atmosphere 1005.0 10 > th dose dependent rect. 6 1
543 37.91 radiation 10.0 43200 < th dose dependent rect. 23 1
568 37.91 radiation 1.0 90 < th dose dependent rect. 3 16
571 37.92 humidity 80.0 4320 > th dose independent rect. 4 1
572 37.92 temperature 25.0 270 > th dose independent rect. 20 3
588 37.93 atmosphere 1015.0 90 < th dose independent rect. 22 1
594 37.93 temperature 25.0 4320 < th dose independent rect. 4 2
610 37.93 atmosphere 1010.0 270 < th dose independent rect. 24 17
623 37.94 temperature 25.0 720 > th dose independent sin 8 NA
640 37.94 atmosphere 1010.0 10 < th dose independent rect. 15 23
645 37.94 atmosphere 995.0 90 > th dose dependent rect. 3 2
651 37.95 humidity 80.0 4320 < th dose independent rect. 4 1
657 37.95 temperature 25.0 1440 < th dose independent rect. 23 10
664 37.95 radiation 1.0 90 < th dose independent rect. 23 23
678 37.95 humidity 80.0 4320 < th dose dependent rect. 24 8
685 37.96 radiation 1.0 90 > th dose independent sin 4 NA
689 37.96 temperature 25.0 720 < th dose independent rect. 2 5
707 37.96 atmosphere 1005.0 10 > th dose dependent rect. 5 7
713 37.96 radiation 10.0 30 < th dose dependent rect. 24 17
721 37.97 atmosphere 1000.0 30 > th dose independent rect. 24 5
724 37.97 radiation 1.0 30 < th dose independent rect. 24 6
735 37.97 atmosphere 995.0 90 > th dose independent rect. 15 14
737 37.97 atmosphere 1010.0 10 < th dose independent rect. 13 23
755 37.98 temperature 25.0 10 > th dose independent rect. 2 4
789 37.99 humidity 80.0 4320 < th dose dependent rect. 24 1
797 38.00 wind 3.0 90 < th dose independent rect. 22 1
799 38.00 humidity 90.0 90 < th dose independent rect. 22 1
814 38.00 atmosphere 1010.0 10 < th dose independent rect. 6 16
818 38.00 humidity 80.0 30 > th dose dependent rect. 6 1
840 38.00 atmosphere 1005.0 90 > th dose dependent rect. 5 18
846 38.01 temperature 25.0 4320 > th dose independent rect. 4 2
882 38.01 temperature 15.0 30 > th dose dependent rect. 24 5
883 38.01 temperature 25.0 90 > th dose dependent rect. 23 9
893 38.02 atmosphere 1010.0 720 < th dose independent rect. 3 1
956 38.03 radiation 1.0 30 < th dose independent rect. 3 19
963 38.03 temperature 30.0 90 < th dose dependent rect. 3 2
973 38.03 humidity 80.0 4320 < th dose dependent rect. 24 5
989 38.03 radiation 10.0 10 < th dose dependent rect. 16 14
991 38.03 temperature 10.0 30 > th dose dependent rect. 5 22
1000 38.04 temperature 25.0 10 > th dose independent rect. 5 6