Os05g0121800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0121800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 242.73 | 0.732 | 4.97 | -0.476 | 1.15 | 1.08 | -0.424 | 0.396 | 0.0094 | 21.5 | 21.4 | 1135 | -- | -- |
| 243.11 | 0.726 | 4.98 | -0.569 | 1.15 | 1.06 | -0.407 | -- | -0.0117 | 21.5 | 21.4 | 1128 | -- | -- |
| 243.37 | 0.727 | 4.97 | -0.488 | 1.15 | 1.08 | -- | 0.306 | 0.00389 | 21.5 | 21.39 | 1134 | -- | -- |
| 243.58 | 0.727 | 4.98 | -0.563 | 1.15 | 1.05 | -- | -- | -0.0121 | 21.5 | 21.38 | 1128 | -- | -- |
| 308.35 | 0.818 | 4.96 | -0.568 | -- | 1.33 | -- | 0.2 | -0.0682 | -- | 21.4 | 830 | -- | -- |
| 277.3 | 0.781 | 4.92 | -0.16 | 1.24 | -- | -0.416 | -- | 0.281 | 21.8 | -- | -- | -- | -- |
| 277.96 | 0.781 | 4.92 | -0.144 | 1.24 | -- | -- | -- | 0.281 | 21.8 | -- | -- | -- | -- |
| 308.47 | 0.818 | 4.96 | -0.615 | -- | 1.31 | -- | -- | -0.0795 | -- | 21.34 | 816 | -- | -- |
| 249.54 | 0.736 | 4.96 | -- | 1.11 | 0.798 | -- | -- | 0.0562 | 21.6 | 22.2 | 978 | -- | -- |
| 369.97 | 0.899 | 4.88 | -0.132 | -- | -- | -- | -- | 0.28 | -- | -- | -- | -- | -- |
| 278.51 | 0.781 | 4.91 | -- | 1.24 | -- | -- | -- | 0.297 | 21.8 | -- | -- | -- | -- |
| 317.33 | 0.83 | 4.94 | -- | -- | 1.04 | -- | -- | -0.00239 | -- | 22.2 | 877 | -- | -- |
| 370.42 | 0.898 | 4.88 | -- | -- | -- | -- | -- | 0.295 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 238.67 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 13 |
| 2 | 238.80 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 15 |
| 9 | 239.53 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 15 |
| 10 | 239.62 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 1 |
| 13 | 239.73 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 20 | 239.85 | temperature | 30 | 720 | < th | dose dependent | sin | 7 | NA |
| 27 | 240.06 | temperature | 15 | 720 | > th | dose dependent | sin | 7 | NA |
| 55 | 240.76 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 20 |
| 90 | 241.20 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 11 |
| 96 | 241.33 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 1 |
| 97 | 241.35 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 9 |
| 159 | 241.96 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 2 |
| 239 | 242.79 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 7 |
| 288 | 243.39 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 2 |
| 317 | 243.66 | humidity | 90 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 332 | 243.80 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 10 |
| 337 | 243.87 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 338 | 243.87 | temperature | 15 | 720 | > th | dose dependent | rect. | 2 | 4 |
| 345 | 243.93 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 5 |
| 359 | 244.04 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 15 |
| 364 | 244.09 | temperature | 20 | 720 | < th | dose independent | rect. | 22 | 11 |
| 374 | 244.11 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 390 | 244.23 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 17 |
| 428 | 244.50 | temperature | 20 | 720 | > th | dose independent | sin | 8 | NA |
| 475 | 244.85 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 1 |
| 501 | 245.01 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 7 |
| 504 | 245.03 | temperature | 20 | 720 | < th | dose independent | sin | 8 | NA |
| 570 | 245.42 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 10 |
| 580 | 245.46 | temperature | 10 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 640 | 245.74 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 22 |
| 700 | 245.99 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 3 |
| 712 | 246.03 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 12 |
| 793 | 246.36 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 827 | 246.48 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 841 | 246.59 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 3 |
| 872 | 246.67 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 3 |
| 889 | 246.72 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 909 | 246.76 | temperature | 25 | 720 | < th | dose independent | rect. | 6 | 5 |
| 911 | 246.76 | temperature | 15 | 1440 | > th | dose dependent | rect. | 19 | 9 |
| 922 | 246.79 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 2 |