Os05g0120900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0120900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 467.54 | 1.02 | 3.64 | -1.46 | 0.192 | 11.5 | 0.723 | -63.8 | -0.657 | 5.43 | 31.58 | 66 | 2.55 | -- |
| 485.25 | 1.03 | 3.51 | -0.334 | 0.166 | 3.35 | 0.689 | -- | -0.674 | 5.44 | 31.58 | 66 | 2.55 | -- |
| 465.78 | 1.01 | 3.64 | -1.36 | 0.177 | 11.7 | -- | -66.1 | -0.675 | 5.75 | 31.7 | 63 | 2.44 | -- |
| 485.71 | 1.03 | 3.51 | -0.327 | 0.143 | 3.52 | -- | -- | -0.682 | 5.46 | 31.7 | 63 | 2.44 | -- |
| 466.48 | 1.01 | 3.64 | -1.34 | -- | 11.8 | -- | -66.5 | -0.673 | -- | 31.7 | 63 | 2.4 | -- |
| 543.61 | 1.09 | 3.53 | -0.237 | 0.117 | -- | 0.2 | -- | -0.74 | 10.1 | -- | -- | -- | -- |
| 543.73 | 1.09 | 3.53 | -0.228 | 0.116 | -- | -- | -- | -0.739 | 10.9 | -- | -- | -- | -- |
| 486.59 | 1.03 | 3.52 | -0.32 | -- | 3.5 | -- | -- | -0.68 | -- | 31.7 | 63 | 2.4 | -- |
| 488.51 | 1.04 | 3.51 | -- | 0.135 | 3.47 | -- | -- | -0.647 | 5.61 | 31.7 | 63 | 2.44 | -- |
| 544.57 | 1.09 | 3.53 | -0.231 | -- | -- | -- | -- | -0.74 | -- | -- | -- | -- | -- |
| 545.1 | 1.09 | 3.52 | -- | 0.118 | -- | -- | -- | -0.714 | 11 | -- | -- | -- | -- |
| 489.28 | 1.03 | 3.51 | -- | -- | 3.45 | -- | -- | -0.645 | -- | 31.7 | 63 | 2.4 | -- |
| 545.97 | 1.09 | 3.52 | -- | -- | -- | -- | -- | -0.714 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 454.44 | temperature | 30 | 90 | > th | dose dependent | rect. | 10 | 1 |
| 2 | 458.23 | temperature | 30 | 90 | > th | dose independent | rect. | 10 | 1 |
| 19 | 491.84 | temperature | 25 | 270 | > th | dose dependent | rect. | 7 | 1 |
| 21 | 492.65 | temperature | 30 | 10 | > th | dose dependent | rect. | 12 | 1 |
| 23 | 493.01 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 6 | 1 |
| 24 | 493.43 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 7 | 4 |
| 35 | 495.05 | radiation | 30 | 270 | > th | dose independent | rect. | 7 | 1 |
| 52 | 495.88 | temperature | 25 | 720 | > th | dose dependent | rect. | 1 | 7 |
| 58 | 496.96 | temperature | 25 | 720 | > th | dose dependent | rect. | 5 | 2 |
| 59 | 497.07 | temperature | 25 | 270 | > th | dose dependent | rect. | 4 | 4 |
| 121 | 501.89 | temperature | 30 | 90 | > th | dose dependent | sin | 9 | NA |
| 218 | 504.85 | temperature | 30 | 270 | > th | dose independent | rect. | 8 | 3 |
| 232 | 504.87 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 7 | 3 |
| 238 | 505.08 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 6 | 1 |
| 240 | 505.20 | temperature | 30 | 10 | > th | dose dependent | rect. | 16 | 21 |
| 262 | 507.14 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 1 |
| 291 | 509.00 | temperature | 25 | 270 | > th | dose independent | rect. | 5 | 3 |
| 336 | 510.12 | temperature | 25 | 30 | > th | dose independent | rect. | 7 | 1 |
| 419 | 512.64 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 1 |
| 508 | 514.09 | temperature | 30 | 270 | > th | dose independent | sin | 9 | NA |
| 531 | 514.34 | temperature | 15 | 90 | > th | dose dependent | rect. | 6 | 17 |
| 535 | 514.38 | temperature | 15 | 90 | > th | dose dependent | rect. | 6 | 21 |
| 538 | 514.45 | radiation | 30 | 90 | > th | dose dependent | rect. | 7 | 1 |
| 556 | 514.53 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 4 | 7 |
| 589 | 514.88 | temperature | 30 | 270 | < th | dose independent | sin | 9 | NA |
| 634 | 515.29 | temperature | 25 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 769 | 516.22 | atmosphere | 1005 | 90 | < th | dose independent | rect. | 4 | 7 |
| 783 | 516.38 | radiation | 40 | 90 | > th | dose dependent | rect. | 9 | 2 |
| 887 | 517.40 | temperature | 15 | 30 | > th | dose dependent | rect. | 7 | 13 |
| 997 | 518.33 | temperature | 25 | 720 | < th | dose independent | rect. | 2 | 6 |