Os05g0120800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0120800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 94.34 | 0.456 | 6.91 | -0.349 | 0.235 | -0.597 | 0.326 | -0.326 | -0.426 | 22.5 | 24.4 | 124 | -- | -- |
| 94.84 | 0.454 | 6.91 | -0.417 | 0.225 | -0.588 | 0.256 | -- | -0.436 | 22 | 24.31 | 133 | -- | -- |
| 94.75 | 0.453 | 6.91 | -0.385 | 0.233 | -0.597 | -- | -0.248 | -0.434 | 22.4 | 24.37 | 123 | -- | -- |
| 95.03 | 0.454 | 6.92 | -0.457 | 0.226 | -0.608 | -- | -- | -0.46 | 22.5 | 24.3 | 130 | -- | -- |
| 97.43 | 0.46 | 6.9 | -0.352 | -- | -0.583 | -- | -0.311 | -0.42 | -- | 24.47 | 181 | -- | -- |
| 116.6 | 0.506 | 6.85 | -0.256 | 0.369 | -- | 0.407 | -- | -0.132 | 18.4 | -- | -- | -- | -- |
| 117 | 0.507 | 6.84 | -0.261 | 0.371 | -- | -- | -- | -0.13 | 18.3 | -- | -- | -- | -- |
| 97.8 | 0.461 | 6.91 | -0.451 | -- | -0.598 | -- | -- | -0.454 | -- | 24.47 | 181 | -- | -- |
| 100.41 | 0.467 | 6.89 | -- | 0.219 | -0.549 | -- | -- | -0.382 | 21.8 | 24.4 | 123 | -- | -- |
| 124.14 | 0.521 | 6.84 | -0.271 | -- | -- | -- | -- | -0.138 | -- | -- | -- | -- | -- |
| 118.8 | 0.51 | 6.84 | -- | 0.375 | -- | -- | -- | -0.101 | 18.2 | -- | -- | -- | -- |
| 102.99 | 0.473 | 6.89 | -- | -- | -0.549 | -- | -- | -0.381 | -- | 24.46 | 174 | -- | -- |
| 126.08 | 0.524 | 6.83 | -- | -- | -- | -- | -- | -0.108 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 85.10 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 4 | 86.98 | temperature | 15 | 90 | > th | dose dependent | rect. | 6 | 22 |
| 53 | 92.86 | temperature | 15 | 90 | > th | dose dependent | rect. | 17 | 23 |
| 62 | 93.22 | temperature | 15 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 64 | 93.29 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 79 | 93.85 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 162 | 95.51 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 174 | 95.68 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 175 | 95.70 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 187 | 95.93 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 20 |
| 213 | 96.23 | temperature | 25 | 90 | < th | dose independent | rect. | 12 | 23 |
| 226 | 96.33 | temperature | 25 | 90 | < th | dose independent | rect. | 4 | 17 |
| 231 | 96.42 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 241 | 96.55 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 245 | 96.60 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 249 | 96.66 | temperature | 20 | 90 | > th | dose dependent | sin | 7 | NA |
| 256 | 96.71 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 267 | 96.79 | temperature | 25 | 90 | < th | dose independent | rect. | 4 | 15 |
| 274 | 96.85 | temperature | 25 | 270 | < th | dose independent | rect. | 11 | 21 |
| 275 | 96.85 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 281 | 96.87 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 284 | 96.90 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 291 | 96.99 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 303 | 97.07 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 307 | 97.09 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 17 |
| 322 | 97.27 | temperature | 30 | 30 | < th | dose dependent | rect. | 4 | 14 |
| 337 | 97.35 | temperature | 25 | 270 | < th | dose independent | rect. | 24 | 22 |
| 340 | 97.36 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 344 | 97.42 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 20 |
| 348 | 97.43 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 23 |
| 354 | 97.45 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 364 | 97.52 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 369 | 97.54 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 420 | 97.85 | temperature | 25 | 270 | < th | dose independent | sin | 8 | NA |
| 432 | 97.89 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 21 |
| 435 | 97.90 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 19 |
| 501 | 98.25 | temperature | 30 | 30 | < th | dose dependent | rect. | 4 | 18 |
| 502 | 98.26 | temperature | 25 | 270 | > th | dose independent | rect. | 17 | 21 |
| 504 | 98.26 | temperature | 25 | 90 | > th | dose independent | rect. | 17 | 23 |
| 512 | 98.28 | temperature | 30 | 90 | < th | dose dependent | sin | 7 | NA |
| 515 | 98.30 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 17 |
| 520 | 98.33 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 528 | 98.36 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 579 | 98.53 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 655 | 98.85 | temperature | 30 | 270 | < th | dose dependent | sin | 9 | NA |
| 686 | 98.98 | temperature | 25 | 90 | < th | dose independent | no | NA | NA |
| 694 | 99.02 | temperature | 25 | 270 | > th | dose independent | sin | 8 | NA |
| 709 | 99.07 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 711 | 99.08 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 759 | 99.29 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 15 |
| 763 | 99.31 | temperature | 25 | 90 | < th | dose independent | rect. | 19 | 23 |
| 793 | 99.44 | temperature | 25 | 90 | < th | dose independent | rect. | 15 | 23 |
| 806 | 99.48 | temperature | 25 | 90 | < th | dose independent | rect. | 17 | 23 |
| 865 | 99.63 | temperature | 20 | 10 | > th | dose independent | rect. | 7 | 22 |
| 889 | 99.70 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 4 |
| 908 | 99.77 | temperature | 25 | 90 | < th | dose independent | rect. | 4 | 7 |
| 931 | 99.84 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 1 |