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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0119700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.77 (0.0688) R2 : 0.445
β1 : -3.63 (0.255) R2dD : 0.275 R2D : 0.223
β2 : 0.533 (0.172) R2dC : 0.0127 R2C : -0.0115
β3 : 3.22 (0.538) R2dE : 0.0783 R2E : 0.0527
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 12.8 (1.73) R2dD*E : 0.103 R2D*E : -0.056
γ1 : -1.03 (0.155) R2dN8 : 0.0842 R2N8 : 0.0293
σ : 1.25
deviance : 722.34
__
_____
C
peak time of C : 3.08
E
wheather : humidity
threshold : 69.47
memory length : 5089
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18.1
open length of G : 1.5

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
722.71 1.26 4.77 -3.65 0.538 3.07 -0.0337 12.5 -1.03 3.07 69.72 5040 18 1.67
768.94 1.29 4.68 -3.76 0.807 1.31 0.313 -- -1.04 3.65 73.28 3148 17.5 4.91
722.34 1.25 4.77 -3.63 0.533 3.22 -- 12.8 -1.03 3.08 69.47 5089 18.1 1.5
745.57 1.27 4.67 -3.89 0.501 1.39 -- -- -1.06 3.72 76.27 2373 17.5 5.47
737.72 1.27 4.77 -3.58 -- 3.52 -- 13.3 -1 -- 69.77 5045 18.1 1.67
817.22 1.34 4.73 -3.9 0.831 -- 0.657 -- -1.21 3.27 -- -- -- --
818.6 1.34 4.74 -3.92 0.833 -- -- -- -1.21 3.21 -- -- -- --
755.51 1.28 4.71 -3.89 -- 1.53 -- -- -1.06 -- 77.05 2368 17.4 5.27
937.21 1.43 4.61 -- 0.83 3.16 -- -- -0.503 2.97 68.99 47520 15.9 2.3
858 1.37 4.73 -3.88 -- -- -- -- -1.19 -- -- -- -- --
1222.57 1.64 4.64 -- 0.756 -- -- -- -0.775 3.21 -- -- -- --
973.28 1.45 4.57 -- -- 3.1 -- -- -0.451 -- 69.01 47520 15.9 2.28
1255.03 1.65 4.64 -- -- -- -- -- -0.759 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 729.69 humidity 70 4320 < th dose dependent rect. 18 2
15 734.53 temperature 30 4320 > th dose dependent rect. 18 1
29 735.00 temperature 30 720 > th dose dependent rect. 18 1
43 735.78 humidity 60 4320 < th dose independent rect. 17 3
58 736.43 humidity 50 1440 < th dose dependent rect. 16 1
61 737.31 wind 7 43200 > th dose dependent rect. 14 20
62 737.32 wind 7 43200 > th dose dependent rect. 15 18
110 738.37 wind 9 43200 < th dose independent rect. 13 21
111 738.44 wind 9 43200 > th dose independent rect. 13 21
114 738.63 humidity 50 1440 > th dose independent rect. 16 1
116 738.81 humidity 70 720 < th dose independent rect. 18 2
128 739.14 wind 7 43200 < th dose independent rect. 15 17
143 739.39 wind 7 43200 > th dose independent rect. 15 17
149 739.49 humidity 70 720 > th dose independent rect. 19 8
154 739.88 humidity 90 4320 > th dose dependent rect. 2 2
155 739.89 humidity 60 4320 > th dose independent rect. 18 6
157 739.99 humidity 60 4320 > th dose independent rect. 18 11
158 740.01 humidity 60 4320 > th dose independent rect. 18 2
181 740.43 humidity 70 720 > th dose independent rect. 17 8
184 740.46 humidity 60 4320 > th dose independent rect. 18 14
225 740.97 wind 7 43200 > th dose dependent rect. 21 23
283 742.29 humidity 70 720 < th dose dependent rect. 18 2
329 742.70 wind 7 43200 < th dose independent sin 14 NA
335 742.76 wind 7 43200 > th dose dependent rect. 6 23
337 742.77 wind 7 43200 > th dose dependent no NA NA
339 742.80 wind 7 43200 > th dose dependent rect. 4 23
341 742.83 wind 7 43200 > th dose dependent rect. 1 23
350 742.92 wind 7 43200 > th dose independent sin 14 NA
367 743.06 wind 9 43200 > th dose independent rect. 15 23
376 743.16 wind 7 43200 > th dose dependent sin 14 NA
378 743.17 wind 7 43200 > th dose dependent rect. 15 12
391 743.26 wind 7 43200 > th dose dependent rect. 18 23
460 743.85 wind 1 90 < th dose independent rect. 4 1
526 744.75 wind 9 43200 > th dose dependent sin 17 NA
542 745.00 wind 9 43200 > th dose independent rect. 22 22
547 745.04 wind 9 43200 > th dose independent rect. 4 23
551 745.11 wind 9 43200 > th dose independent no NA NA
557 745.14 wind 9 43200 > th dose independent rect. 2 23
590 745.33 wind 1 90 < th dose dependent rect. 4 1
622 745.48 temperature 30 720 > th dose independent rect. 18 1
644 745.51 wind 3 4320 > th dose independent rect. 5 2
680 745.72 wind 9 43200 < th dose independent rect. 22 22
687 745.77 wind 9 43200 > th dose independent rect. 4 16
720 745.90 wind 9 43200 > th dose independent rect. 18 23
726 745.93 wind 7 43200 > th dose dependent sin 22 NA
736 746.01 wind 9 43200 < th dose independent rect. 4 22
740 746.05 wind 3 4320 < th dose independent rect. 5 2
765 746.15 wind 9 43200 < th dose independent rect. 4 16
768 746.16 wind 9 43200 < th dose independent no NA NA
781 746.21 wind 9 43200 < th dose independent rect. 1 23
811 746.32 wind 7 43200 < th dose independent rect. 18 23
817 746.37 wind 3 4320 < th dose independent rect. 8 1