FiT-DB / Search/ Help/ Sample detail

Os05g0119300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : XYPPX repeat containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 15.7 (0.0142) R2 : 0.000696
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0168 (0.0298) R2dN8 : 0.000899 R2N8 : 0.000696
σ : 0.267
deviance : 32.68
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
23.28 0.227 15.7 0.334 0.389 -0.183 0.835 -1.15 0.0601 17.8 31.14 651 -- --
24.06 0.228 15.7 0.356 0.231 -0.219 0.344 -- 0.123 18.2 32.91 1286 -- --
23.53 0.226 15.7 0.305 0.273 -0.173 -- -0.736 0.0755 17.7 34.56 1313 -- --
24.17 0.229 15.7 0.415 0.246 -0.205 -- -- 0.114 18.1 32.85 1288 -- --
26.72 0.241 15.7 0.318 -- -0.179 -- -0.667 0.0796 -- 34.08 1313 -- --
25.7 0.238 15.7 0.368 0.254 -- 0.287 -- 0.0614 17.8 -- -- -- --
25.89 0.238 15.7 0.366 0.256 -- -- -- 0.0627 17.6 -- -- -- --
27.49 0.244 15.7 0.407 -- -0.201 -- -- 0.109 -- 32.32 1312 -- --
28.05 0.247 15.7 -- 0.229 -0.194 -- -- 0.0845 16.9 37.98 8490 -- --
29.3 0.253 15.7 0.358 -- -- -- -- 0.0565 -- -- -- -- --
29.42 0.254 15.7 -- 0.25 -- -- -- 0.0219 17.6 -- -- -- --
30.95 0.259 15.7 -- -- -0.21 -- -- 0.0798 -- 37.98 8529 -- --
32.68 0.267 15.7 -- -- -- -- -- 0.0168 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 21.83 temperature 15.0 270 > th dose dependent rect. 5 8
12 22.28 temperature 20.0 270 > th dose independent rect. 5 8
14 22.29 temperature 25.0 10 > th dose independent rect. 15 15
15 22.31 humidity 60.0 270 > th dose independent rect. 5 10
22 22.43 humidity 60.0 270 > th dose independent rect. 19 20
27 22.48 humidity 60.0 270 > th dose independent rect. 5 19
28 22.49 wind 1.0 43200 < th dose dependent rect. 8 2
29 22.50 atmosphere 1005.0 270 > th dose independent rect. 6 18
31 22.50 temperature 15.0 90 > th dose dependent rect. 15 15
37 22.53 wind 1.0 43200 < th dose dependent rect. 1 1
40 22.54 temperature 15.0 10 > th dose dependent rect. 15 15
42 22.57 wind 5.0 43200 < th dose dependent rect. 6 1
46 22.57 temperature 10.0 270 > th dose dependent rect. 13 16
68 22.64 wind 9.0 43200 < th dose independent rect. 10 5
70 22.64 wind 1.0 43200 < th dose dependent rect. 5 2
75 22.66 precipitation 0.1 270 < th dose independent rect. 15 14
77 22.66 precipitation 0.1 270 < th dose dependent rect. 15 14
81 22.67 wind 1.0 43200 < th dose dependent rect. 24 13
87 22.68 temperature 25.0 10 > th dose independent rect. 13 17
88 22.68 wind 1.0 43200 > th dose dependent rect. 6 1
98 22.70 wind 1.0 43200 < th dose dependent rect. 24 11
101 22.70 wind 9.0 14400 > th dose dependent rect. 16 21
104 22.71 precipitation 0.1 270 < th dose independent rect. 22 23
105 22.71 radiation 40.0 43200 > th dose dependent rect. 10 1
106 22.71 wind 7.0 43200 > th dose dependent rect. 10 4
111 22.71 precipitation 0.1 270 < th dose dependent rect. 22 23
113 22.72 wind 9.0 14400 < th dose independent rect. 17 20
117 22.73 wind 9.0 43200 > th dose independent rect. 10 5
134 22.75 wind 3.0 43200 > th dose independent rect. 6 1
143 22.76 wind 9.0 43200 < th dose independent rect. 5 10
145 22.76 precipitation 0.1 14400 > th dose independent rect. 6 12
146 22.76 precipitation 0.1 14400 < th dose independent rect. 6 12
149 22.76 precipitation 0.1 43200 > th dose dependent rect. 15 3
152 22.76 precipitation 0.1 14400 < th dose dependent rect. 6 12
154 22.77 precipitation 0.1 14400 < th dose independent rect. 17 2
161 22.77 precipitation 0.1 43200 > th dose dependent rect. 17 2
162 22.77 precipitation 0.1 14400 < th dose dependent rect. 17 2
165 22.78 wind 3.0 43200 < th dose independent rect. 6 1
169 22.78 wind 9.0 43200 < th dose independent rect. 10 11
173 22.78 wind 9.0 43200 < th dose independent rect. 20 20
176 22.78 wind 1.0 43200 < th dose dependent rect. 5 5
180 22.79 radiation 40.0 43200 < th dose independent rect. 10 1
183 22.79 precipitation 0.1 14400 > th dose independent rect. 17 2
191 22.79 wind 9.0 43200 > th dose independent rect. 20 20
197 22.79 temperature 20.0 30 > th dose dependent rect. 17 13
209 22.80 wind 7.0 270 < th dose independent rect. 15 14
212 22.80 wind 9.0 43200 < th dose independent rect. 10 20
225 22.80 wind 9.0 43200 > th dose dependent rect. 11 20
250 22.82 wind 5.0 14400 < th dose independent rect. 5 4
258 22.82 wind 9.0 43200 < th dose independent rect. 4 17
263 22.82 precipitation 0.1 270 < th dose independent rect. 24 19
264 22.82 radiation 1.0 270 < th dose independent rect. 5 20
269 22.82 temperature 10.0 30 > th dose dependent rect. 15 8
274 22.82 precipitation 0.1 270 < th dose dependent rect. 24 19
275 22.83 wind 9.0 43200 < th dose independent sin 0 NA
283 22.83 temperature 25.0 30 > th dose independent rect. 15 8
289 22.83 wind 9.0 14400 < th dose independent rect. 20 17
296 22.83 temperature 10.0 30 > th dose dependent rect. 13 10
299 22.84 temperature 20.0 14400 > th dose independent rect. 20 1
318 22.84 wind 9.0 43200 > th dose independent rect. 10 20
319 22.84 wind 9.0 14400 > th dose independent rect. 17 20
327 22.84 wind 9.0 43200 < th dose independent rect. 17 23
330 22.84 wind 9.0 43200 > th dose dependent rect. 10 8
348 22.85 temperature 25.0 10 > th dose independent rect. 17 13
353 22.85 atmosphere 1005.0 90 > th dose independent rect. 10 15
357 22.85 temperature 25.0 270 > th dose independent rect. 13 16
373 22.85 wind 9.0 43200 > th dose independent rect. 17 23
381 22.85 wind 1.0 43200 < th dose dependent rect. 3 10
386 22.86 wind 9.0 43200 > th dose independent rect. 14 1
398 22.86 wind 9.0 43200 > th dose independent rect. 10 11
426 22.87 wind 1.0 43200 < th dose independent rect. 5 6
467 22.87 wind 9.0 43200 > th dose dependent rect. 10 11
472 22.88 temperature 20.0 14400 < th dose independent rect. 21 1
489 22.88 wind 9.0 43200 > th dose independent rect. 4 17
518 22.89 wind 9.0 43200 > th dose independent sin 0 NA
522 22.89 radiation 20.0 43200 > th dose independent rect. 9 1
523 22.89 radiation 40.0 43200 > th dose independent rect. 10 1
577 22.90 temperature 25.0 270 > th dose independent rect. 13 7
583 22.90 wind 3.0 43200 > th dose independent rect. 3 12
596 22.90 wind 1.0 30 > th dose independent rect. 23 16
616 22.90 humidity 90.0 14400 > th dose dependent rect. 9 2
636 22.91 wind 9.0 43200 < th dose independent no NA NA
695 22.92 wind 9.0 43200 < th dose independent rect. 14 1
699 22.92 wind 3.0 43200 > th dose independent rect. 4 10
752 22.93 wind 9.0 43200 > th dose independent no NA NA
753 22.93 humidity 80.0 43200 > th dose independent rect. 22 1
754 22.93 humidity 80.0 43200 < th dose independent rect. 22 1
756 22.93 precipitation 0.1 14400 > th dose independent rect. 8 2
799 22.93 wind 9.0 43200 > th dose dependent sin 20 NA
800 22.93 precipitation 0.1 14400 > th dose dependent rect. 8 2
821 22.94 wind 3.0 43200 < th dose independent rect. 3 11
825 22.94 atmosphere 1005.0 10 > th dose independent rect. 12 14
856 22.94 radiation 30.0 43200 < th dose dependent rect. 9 2
875 22.94 precipitation 0.1 14400 > th dose dependent rect. 2 16
876 22.94 wind 9.0 14400 > th dose dependent rect. 20 17
882 22.95 wind 7.0 270 < th dose independent rect. 5 9
909 22.95 precipitation 0.1 90 < th dose independent rect. 24 23
933 22.95 precipitation 0.1 90 < th dose dependent rect. 24 23
936 22.96 radiation 20.0 43200 < th dose independent rect. 9 1
942 22.96 humidity 60.0 14400 > th dose independent rect. 9 4
943 22.96 humidity 60.0 14400 > th dose independent rect. 6 7
953 22.96 humidity 60.0 14400 > th dose independent rect. 24 13
977 22.96 wind 9.0 43200 > th dose dependent sin 17 NA
994 22.96 precipitation 0.1 14400 > th dose dependent rect. 11 8
999 22.96 atmosphere 1015.0 30 < th dose dependent rect. 13 10