Os05g0119100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0119100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 75.03 | 0.407 | 9.2 | 0.53 | 0.756 | 1.2 | 0.72 | 4.03 | -0.164 | 23.7 | 18.9 | 6103 | -- | -- |
| 84.96 | 0.433 | 9.03 | 0.822 | 0.666 | 0.221 | 0.736 | -- | 0.00764 | 23.3 | 24.39 | 4385 | -- | -- |
| 77.27 | 0.409 | 9.2 | 0.501 | 0.751 | 1.17 | -- | 3.97 | -0.168 | 23.8 | 18.97 | 6086 | -- | -- |
| 86.89 | 0.437 | 9.03 | 0.793 | 0.652 | 0.236 | -- | -- | 0.0114 | 23.3 | 24.5 | 1622 | -- | -- |
| 112.57 | 0.494 | 9.21 | 0.576 | -- | 1.38 | -- | 4.52 | -0.158 | -- | 18.99 | 7302 | -- | -- |
| 88.27 | 0.44 | 9.06 | 0.746 | 0.747 | -- | 0.736 | -- | -0.114 | 23.7 | -- | -- | -- | -- |
| 90.62 | 0.446 | 9.06 | 0.716 | 0.744 | -- | -- | -- | -0.118 | 23.8 | -- | -- | -- | -- |
| 110.36 | 0.491 | 9 | 0.821 | -- | 0.403 | -- | -- | 0.0954 | -- | 24.9 | 40591 | -- | -- |
| 102.28 | 0.474 | 9.06 | -- | 0.681 | 0.161 | -- | -- | -0.117 | 23.5 | 24.9 | 2821 | -- | -- |
| 125.47 | 0.523 | 9.04 | 0.738 | -- | -- | -- | -- | -0.108 | -- | -- | -- | -- | -- |
| 104.14 | 0.477 | 9.08 | -- | 0.753 | -- | -- | -- | -0.197 | 23.9 | -- | -- | -- | -- |
| 125.25 | 0.521 | 9.08 | -- | -- | -0.691 | -- | -- | -0.273 | -- | 11.35 | 47520 | -- | -- |
| 139.85 | 0.552 | 9.06 | -- | -- | -- | -- | -- | -0.19 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 73.92 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 18 |
| 7 | 74.74 | temperature | 10 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 10 | 74.77 | temperature | 30 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 25 | 75.08 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 17 |
| 31 | 75.12 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 5 |
| 37 | 75.16 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 58 | 75.24 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 15 |
| 59 | 75.25 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 3 |
| 160 | 75.70 | radiation | 20 | 10 | < th | dose dependent | rect. | 24 | 17 |
| 188 | 75.80 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 195 | 75.82 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 197 | 75.82 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 8 |
| 278 | 76.04 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 22 |
| 279 | 76.05 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 342 | 76.19 | temperature | 25 | 4320 | < th | dose dependent | sin | 13 | NA |
| 343 | 76.19 | temperature | 25 | 1440 | < th | dose dependent | sin | 16 | NA |
| 350 | 76.20 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 8 |
| 361 | 76.22 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 10 |
| 372 | 76.25 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 4 |
| 392 | 76.29 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 10 |
| 405 | 76.31 | temperature | 20 | 4320 | < th | dose independent | rect. | 13 | 14 |
| 419 | 76.32 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 17 |
| 447 | 76.36 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 16 |
| 462 | 76.39 | temperature | 20 | 4320 | > th | dose independent | rect. | 13 | 15 |
| 479 | 76.42 | temperature | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 493 | 76.44 | temperature | 20 | 4320 | < th | dose independent | sin | 15 | NA |
| 511 | 76.45 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 8 |
| 548 | 76.51 | temperature | 10 | 270 | > th | dose dependent | rect. | 15 | 22 |
| 598 | 76.58 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 10 |
| 617 | 76.61 | radiation | 10 | 10 | < th | dose independent | rect. | 24 | 17 |
| 624 | 76.62 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 17 |
| 662 | 76.66 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 8 |
| 679 | 76.69 | temperature | 10 | 4320 | > th | dose dependent | sin | 12 | NA |
| 774 | 76.82 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 13 |
| 858 | 76.91 | temperature | 10 | 90 | > th | dose dependent | rect. | 17 | 22 |
| 984 | 77.04 | temperature | 15 | 90 | > th | dose dependent | rect. | 21 | 14 |
| 990 | 77.05 | temperature | 20 | 10 | > th | dose dependent | sin | 6 | NA |