FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0118900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.08 (0.0502) R2 : 0.45
β1 : -0.546 (0.313) R2dD : 0.0227 R2D : -0.262
β2 : 1.03 (0.0834) R2dC : 0.194 R2C : 0.0886
β3 : 0.84 (0.126) R2dE : 0.0948 R2E : -0.0557
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -6.39 (0.925) R2dD*E : 0.374 R2D*E : 0.107
γ1 : -0.593 (0.107) R2dN8 : 0.107 R2N8 : -0.0624
σ : 0.635
deviance : 186.04
__
_____
C
peak time of C : 2.39
E
wheather : temperature
threshold : 24.69
memory length : 6178
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
184.36 0.638 5.05 -0.334 0.983 0.808 1.27 -6.5 -0.53 2.28 24.25 1401 -- --
200.24 0.659 4.85 1.28 0.974 0.559 1.02 -- -0.153 2.37 13.18 6302 -- --
186.04 0.635 5.08 -0.546 1.03 0.84 -- -6.39 -0.593 2.39 24.69 6178 -- --
203.4 0.664 4.87 1.12 0.978 0.639 -- -- -0.249 2.4 10.2 12721 -- --
234.98 0.718 4.83 1.39 -- -0.872 -- -3.01 0.00799 -- 24.69 6178 -- --
205.52 0.672 4.81 1.58 0.998 -- 1.05 -- -0.00261 2.26 -- -- -- --
209.59 0.678 4.82 1.55 1 -- -- -- -0.00911 2.36 -- -- -- --
239.45 0.724 4.79 1.75 -- -1.1 -- -- 0.107 -- 24.69 6178 -- --
213.05 0.68 4.94 -- 0.98 1.25 -- -- -0.555 2.39 7.498 47520 -- --
269.06 0.766 4.81 1.6 -- -- -- -- 0.0155 -- -- -- -- --
273.3 0.773 4.86 -- 1.03 -- -- -- -0.182 2.38 -- -- -- --
269.65 0.765 4.94 -- -- 1.31 -- -- -0.555 -- 6.446 47520 -- --
336.35 0.856 4.85 -- -- -- -- -- -0.162 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 181.71 humidity 80 43200 > th dose independent rect. 14 1
2 182.05 humidity 80 43200 < th dose independent rect. 14 1
3 182.26 wind 9 14400 < th dose dependent rect. 12 1
4 182.32 humidity 90 43200 > th dose dependent rect. 20 1
5 182.35 wind 1 14400 > th dose dependent rect. 12 1
8 182.44 atmosphere 1010 14400 > th dose independent rect. 7 1
10 182.48 wind 3 14400 < th dose independent rect. 19 3
11 182.58 humidity 90 43200 > th dose independent rect. 20 1
12 182.63 radiation 1 1440 < th dose dependent rect. 11 20
15 182.70 humidity 90 43200 > th dose independent rect. 19 3
16 182.71 humidity 70 43200 > th dose dependent rect. 14 1
20 182.79 wind 3 43200 < th dose dependent rect. 21 2
23 182.82 humidity 90 43200 > th dose dependent rect. 19 5
25 182.84 atmosphere 1010 14400 > th dose independent rect. 6 3
40 182.97 atmosphere 1010 14400 < th dose independent rect. 6 3
42 183.00 wind 3 14400 > th dose independent rect. 19 3
45 183.07 humidity 80 43200 > th dose independent rect. 13 5
46 183.10 atmosphere 1010 14400 < th dose independent rect. 8 1
75 183.50 wind 3 14400 > th dose independent rect. 11 2
82 183.52 wind 3 14400 > th dose independent rect. 9 4
93 183.63 wind 3 14400 < th dose independent rect. 11 2
95 183.69 humidity 90 43200 > th dose independent rect. 16 8
117 183.88 wind 3 14400 < th dose independent rect. 9 4
123 183.94 temperature 25 1440 > th dose independent rect. 7 16
131 184.00 radiation 1 1440 > th dose independent rect. 11 20
141 184.04 radiation 1 1440 < th dose independent rect. 11 20
162 184.17 wind 1 14400 < th dose dependent rect. 9 21
177 184.25 humidity 90 43200 > th dose dependent sin 17 NA
183 184.31 radiation 1 1440 < th dose dependent rect. 11 11
187 184.33 radiation 1 1440 < th dose dependent rect. 11 8
196 184.34 radiation 1 1440 < th dose dependent rect. 11 14
213 184.37 radiation 1 1440 < th dose dependent sin 15 NA
226 184.44 temperature 25 1440 < th dose independent rect. 7 16
229 184.45 radiation 1 1440 < th dose dependent rect. 14 3
230 184.47 temperature 25 1440 > th dose independent rect. 15 8
251 184.55 wind 7 14400 < th dose independent rect. 12 2
272 184.59 temperature 25 1440 < th dose independent rect. 15 8
336 184.80 humidity 90 43200 < th dose independent rect. 17 5
338 184.81 temperature 25 1440 > th dose dependent sin 15 NA
341 184.81 wind 1 14400 < th dose dependent rect. 12 17
349 184.83 atmosphere 1015 14400 > th dose dependent rect. 6 2
351 184.83 atmosphere 1015 14400 > th dose dependent rect. 1 5
352 184.83 atmosphere 1015 14400 > th dose dependent rect. 5 5
353 184.83 atmosphere 1015 14400 > th dose dependent rect. 1 7
355 184.83 atmosphere 1015 14400 > th dose dependent rect. 3 8
359 184.84 wind 5 14400 < th dose dependent rect. 9 4
361 184.85 atmosphere 1015 14400 > th dose dependent rect. 2 2
365 184.86 atmosphere 1015 14400 > th dose dependent rect. 8 1
371 184.87 temperature 25 1440 > th dose dependent rect. 7 16
392 184.91 temperature 25 1440 > th dose dependent rect. 12 23
398 184.93 temperature 25 1440 > th dose dependent rect. 16 7
409 184.95 temperature 25 1440 > th dose dependent rect. 14 21
460 185.03 temperature 25 1440 > th dose dependent rect. 14 23
486 185.07 wind 7 14400 > th dose independent rect. 12 2
494 185.08 atmosphere 1015 14400 < th dose independent rect. 23 2
496 185.08 radiation 1 1440 < th dose independent rect. 12 6
503 185.09 atmosphere 1015 14400 < th dose independent rect. 22 4
511 185.09 temperature 25 1440 > th dose dependent rect. 15 18
516 185.10 atmosphere 1015 14400 > th dose independent rect. 21 7
527 185.10 temperature 25 1440 > th dose dependent rect. 16 23
533 185.11 temperature 25 1440 > th dose independent rect. 18 22
536 185.11 temperature 25 1440 > th dose dependent rect. 10 13
545 185.12 atmosphere 1015 14400 > th dose independent rect. 23 2
546 185.12 atmosphere 1015 14400 > th dose independent rect. 22 4
558 185.12 temperature 25 1440 > th dose dependent rect. 10 23
628 185.19 radiation 1 1440 > th dose independent rect. 11 7
631 185.19 temperature 25 1440 > th dose dependent rect. 12 11
644 185.20 temperature 25 1440 > th dose dependent no NA NA
688 185.25 atmosphere 1010 14400 < th dose independent rect. 21 1
691 185.25 humidity 90 43200 < th dose independent rect. 16 8
692 185.25 atmosphere 1015 14400 < th dose independent rect. 21 10
768 185.32 atmosphere 1015 14400 > th dose independent rect. 3 1
799 185.35 temperature 25 14400 > th dose independent rect. 17 2
811 185.36 temperature 25 14400 < th dose independent rect. 17 2
823 185.37 wind 7 14400 < th dose independent rect. 10 5
827 185.37 humidity 80 43200 < th dose independent rect. 7 11
831 185.37 temperature 25 1440 > th dose independent rect. 12 23
834 185.38 atmosphere 1015 14400 < th dose independent rect. 1 1
854 185.38 temperature 25 1440 > th dose dependent rect. 21 23
900 185.41 temperature 25 1440 > th dose independent sin 18 NA
974 185.43 atmosphere 1010 14400 > th dose independent rect. 21 1
991 185.44 humidity 90 43200 < th dose independent rect. 18 1