Os05g0116000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : 11-S plant seed storage protein family protein.
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Os05g0116000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : 11-S plant seed storage protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44.1 | 0.312 | 13.7 | -0.209 | 1.18 | -1.77 | 0.307 | 0.992 | 0.0865 | 15.6 | 30.76 | 757 | -- | -- |
| 44.8 | 0.312 | 13.7 | -0.0164 | 1.27 | -1.74 | 0.39 | -- | 0.124 | 15.7 | 30.28 | 849 | -- | -- |
| 43.93 | 0.309 | 13.7 | -0.284 | 1.34 | -1.67 | -- | 1.38 | 0.133 | 16 | 34.8 | 958 | -- | -- |
| 45.2 | 0.313 | 13.7 | -0.022 | 1.27 | -1.75 | -- | -- | 0.132 | 15.7 | 30.56 | 851 | -- | -- |
| 71.74 | 0.394 | 13.7 | -0.296 | -- | -2.68 | -- | 1.11 | 0.0277 | -- | 93.32 | 265 | -- | -- |
| 87.36 | 0.438 | 13.6 | 0.462 | 1.3 | -- | 0.306 | -- | 0.464 | 16.7 | -- | -- | -- | -- |
| 87.6 | 0.438 | 13.6 | 0.463 | 1.3 | -- | -- | -- | 0.465 | 16.8 | -- | -- | -- | -- |
| 72.59 | 0.397 | 13.7 | -0.125 | -- | -2.65 | -- | -- | 0.075 | -- | 62.69 | 259 | -- | -- |
| 45.19 | 0.313 | 13.6 | -- | 1.31 | -1.74 | -- | -- | 0.142 | 15.7 | 30.86 | 889 | -- | -- |
| 177.29 | 0.622 | 13.6 | 0.414 | -- | -- | -- | -- | 0.431 | -- | -- | -- | -- | -- |
| 93.26 | 0.452 | 13.6 | -- | 1.29 | -- | -- | -- | 0.414 | 16.8 | -- | -- | -- | -- |
| 72.98 | 0.398 | 13.7 | -- | -- | -2.61 | -- | -- | 0.0935 | -- | 36.49 | 259 | -- | -- |
| 181.82 | 0.629 | 13.6 | -- | -- | -- | -- | -- | 0.385 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.40 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 18 | 42.64 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 20 | 42.71 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 21 |
| 22 | 42.72 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 7 |
| 23 | 42.76 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 5 |
| 42 | 43.13 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 21 |
| 60 | 43.37 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 61 | 43.38 | temperature | 20 | 1440 | > th | dose dependent | sin | 18 | NA |
| 76 | 43.45 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 19 |
| 99 | 43.63 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 16 |
| 167 | 43.92 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 17 |
| 177 | 43.97 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 257 | 44.22 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 288 | 44.31 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 326 | 44.42 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 331 | 44.44 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 15 |
| 373 | 44.64 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 382 | 44.67 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 600 | 44.96 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 825 | 45.21 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 17 |
| 914 | 45.34 | temperature | 15 | 720 | > th | dose dependent | sin | 9 | NA |
| 919 | 45.35 | wind | 3 | 43200 | > th | dose dependent | rect. | 20 | 1 |