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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0115200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.32 (0.0227) R2 : 1.86e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00441 (0.0479) R2dN8 : 2.4e-05 R2N8 : 1.86e-05
σ : 0.428
deviance : 84.25
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
77.63 0.414 3.29 0.207 0.481 -0.359 -1.99 2.01 0.0589 11.2 0.1897 94 -- --
81.14 0.42 3.3 0.101 0.448 -0.328 0.304 -- 0.048 11.4 0.2396 86 -- --
80.22 0.42 3.31 0.0823 0.421 -0.269 -- 0.353 0.0141 10.2 0.526 169 -- --
81.03 0.422 3.31 0.0777 0.406 -0.256 -- -- 0.0125 10.1 0.526 169 -- --
83.12 0.425 3.31 0.0744 -- -0.0295 -- 0.365 0.0179 -- 0.1737 196 -- --
82.55 0.426 3.31 0.0648 0.168 -- -0.218 -- 0.00771 6.72 -- -- -- --
82.63 0.426 3.31 0.0623 0.168 -- -- -- 0.00882 7.33 -- -- -- --
82.88 0.424 3.31 0.0881 -- -0.198 -- -- 0.0264 -- 10.09 746 -- --
81.18 0.422 3.31 -- 0.4 -0.251 -- -- 0.00376 10.1 0.526 169 -- --
84.13 0.429 3.32 0.0651 -- -- -- -- 0.0116 -- -- -- -- --
82.73 0.425 3.32 -- 0.169 -- -- -- 0.00189 7.3 -- -- -- --
82.76 0.424 3.31 -- -- -0.215 -- -- 0.0207 -- 5.18 874 -- --
84.25 0.428 3.32 -- -- -- -- -- 0.00441 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 70.28 humidity 90.0 10 < th dose independent rect. 4 1
3 71.18 wind 1.0 30 > th dose independent rect. 4 1
4 71.34 wind 1.0 30 > th dose dependent rect. 4 1
5 71.56 temperature 25.0 10 > th dose independent rect. 4 1
7 71.59 temperature 25.0 90 > th dose dependent rect. 4 1
9 71.61 atmosphere 1005.0 10 > th dose dependent rect. 4 1
13 72.03 temperature 25.0 90 > th dose independent rect. 2 3
17 72.70 atmosphere 1005.0 10 > th dose independent rect. 4 1
18 72.72 temperature 30.0 30 < th dose dependent rect. 4 1
19 72.74 wind 5.0 10 < th dose independent rect. 4 1
22 72.76 radiation 1.0 10 < th dose dependent rect. 4 1
24 72.78 humidity 80.0 10 > th dose independent rect. 4 1
30 72.80 wind 7.0 1440 < th dose independent rect. 5 1
32 72.80 temperature 10.0 10 > th dose independent rect. 4 1
34 72.80 temperature 10.0 1440 > th dose independent rect. 5 1
37 72.80 temperature 30.0 10 < th dose independent rect. 4 1
38 72.80 temperature 30.0 1440 < th dose independent rect. 5 1
42 72.80 humidity 50.0 10 > th dose independent rect. 4 1
45 72.80 humidity 50.0 1440 > th dose independent rect. 5 1
54 72.80 atmosphere 995.0 10 > th dose independent rect. 4 1
55 72.80 atmosphere 995.0 1440 > th dose independent rect. 5 1
56 72.80 atmosphere 1010.0 10 < th dose independent rect. 4 1
58 72.80 atmosphere 1015.0 1440 < th dose independent rect. 5 1
59 72.80 radiation 1.0 10 < th dose independent rect. 4 1
64 72.80 radiation 20.0 1440 < th dose independent rect. 5 1
73 72.80 temperature 10.0 10 > th dose independent rect. 5 23
74 72.80 temperature 10.0 1440 > th dose independent rect. 6 23
77 72.83 precipitation 0.1 10 < th dose independent rect. 4 1
78 72.83 humidity 90.0 10 < th dose dependent rect. 4 1
80 72.83 precipitation 0.1 10 < th dose dependent rect. 4 1
83 72.89 wind 9.0 10 < th dose dependent rect. 4 1
84 72.93 temperature 25.0 90 > th dose dependent rect. 2 3
116 73.00 temperature 10.0 10 > th dose dependent rect. 4 1
117 73.01 humidity 50.0 10 > th dose dependent rect. 4 1
125 73.14 atmosphere 1015.0 30 < th dose dependent rect. 4 1
153 73.82 atmosphere 1005.0 30 > th dose dependent rect. 2 3
165 74.10 precipitation 0.1 30 < th dose independent rect. 5 23
166 74.10 precipitation 0.1 30 < th dose dependent rect. 5 23
170 74.18 atmosphere 995.0 10 > th dose independent rect. 5 23
171 74.18 temperature 25.0 270 > th dose dependent rect. 2 1
179 74.42 wind 9.0 30 < th dose independent rect. 5 23
224 76.14 atmosphere 1005.0 270 > th dose dependent rect. 1 1
225 76.17 atmosphere 1005.0 30 > th dose independent rect. 2 3
240 76.48 humidity 90.0 720 < th dose independent rect. 1 4
267 77.11 humidity 80.0 14400 < th dose dependent rect. 3 6
281 77.31 wind 3.0 30 < th dose independent rect. 2 3
282 77.32 humidity 90.0 720 < th dose dependent rect. 24 5
283 77.35 radiation 1.0 10 < th dose dependent rect. 4 10
285 77.38 radiation 1.0 90 < th dose dependent rect. 1 23
291 77.44 radiation 1.0 90 < th dose dependent rect. 7 22
294 77.46 radiation 1.0 10 < th dose independent rect. 4 10
308 77.58 atmosphere 1000.0 30 > th dose independent rect. 5 21
312 77.59 radiation 1.0 90 < th dose dependent rect. 17 23
314 77.60 radiation 1.0 10 < th dose dependent rect. 4 4
319 77.60 radiation 1.0 90 < th dose dependent rect. 9 20
328 77.65 radiation 1.0 90 < th dose dependent rect. 11 18
329 77.66 temperature 20.0 270 < th dose independent rect. 5 3
333 77.67 temperature 25.0 10 > th dose independent rect. 20 10
334 77.67 radiation 1.0 90 < th dose independent rect. 7 22
336 77.68 radiation 1.0 10 < th dose independent rect. 2 12
346 77.74 wind 9.0 1440 < th dose independent rect. 3 3
347 77.74 temperature 10.0 1440 > th dose independent rect. 3 3
350 77.74 temperature 30.0 1440 < th dose independent rect. 3 3
354 77.74 humidity 50.0 1440 > th dose independent rect. 3 3
363 77.74 atmosphere 995.0 1440 > th dose independent rect. 3 3
364 77.74 radiation 20.0 1440 < th dose independent rect. 3 3
373 77.74 radiation 1.0 10 < th dose independent rect. 4 4
377 77.74 temperature 10.0 1440 > th dose independent rect. 6 21
380 77.74 radiation 1.0 30 < th dose dependent rect. 2 12
396 77.79 humidity 50.0 30 > th dose independent rect. 5 23
399 77.80 humidity 80.0 720 > th dose independent rect. 23 9
400 77.80 wind 9.0 30 < th dose dependent rect. 2 3
421 77.86 precipitation 0.1 30 < th dose independent rect. 2 3
422 77.86 precipitation 0.1 30 < th dose dependent rect. 2 3
425 77.87 radiation 1.0 90 < th dose dependent no NA NA
426 77.87 radiation 1.0 90 < th dose dependent rect. 9 23
427 77.87 radiation 1.0 90 < th dose dependent rect. 11 23
430 77.88 humidity 80.0 30 > th dose independent rect. 2 3
432 77.88 temperature 30.0 720 < th dose independent rect. 17 12
433 77.88 temperature 25.0 720 > th dose dependent rect. 5 3
438 77.89 radiation 1.0 90 < th dose independent rect. 12 17
443 77.90 radiation 1.0 10 < th dose independent rect. 2 4
450 77.91 temperature 10.0 30 > th dose independent rect. 2 3
452 77.91 temperature 30.0 30 < th dose independent rect. 2 3
453 77.91 humidity 50.0 30 > th dose independent rect. 2 3
457 77.91 atmosphere 995.0 30 > th dose independent rect. 2 3
458 77.91 atmosphere 1010.0 30 < th dose independent rect. 2 3
465 77.91 temperature 10.0 30 > th dose independent rect. 5 21
467 77.91 radiation 20.0 30 < th dose dependent rect. 2 3
471 77.92 radiation 1.0 10 < th dose independent rect. 2 10
473 77.92 precipitation 0.1 30 < th dose independent rect. 5 21
475 77.92 precipitation 0.1 30 < th dose dependent rect. 5 21
487 77.94 humidity 70.0 14400 > th dose independent rect. 8 1
493 77.94 radiation 1.0 90 < th dose dependent rect. 15 23
495 77.95 radiation 1.0 10 < th dose independent rect. 2 6
502 77.95 wind 9.0 30 < th dose independent rect. 5 21
505 77.96 radiation 1.0 30 < th dose dependent rect. 2 10
517 77.98 radiation 1.0 30 < th dose dependent rect. 2 6
528 78.00 radiation 1.0 90 < th dose independent rect. 1 23
531 78.01 wind 5.0 14400 < th dose independent rect. 11 1
553 78.05 temperature 30.0 720 < th dose independent rect. 17 4
563 78.06 temperature 30.0 720 < th dose independent rect. 17 20
625 78.14 humidity 70.0 14400 > th dose independent rect. 20 13
636 78.15 humidity 80.0 4320 > th dose dependent rect. 5 4
655 78.16 humidity 70.0 14400 > th dose independent rect. 22 11
664 78.17 humidity 70.0 14400 > th dose independent rect. 24 9
670 78.18 humidity 70.0 14400 > th dose independent rect. 6 3
671 78.18 wind 5.0 14400 < th dose independent rect. 11 4
672 78.18 humidity 70.0 14400 > th dose independent rect. 4 5
683 78.20 radiation 1.0 90 < th dose independent rect. 17 23
695 78.21 humidity 50.0 30 > th dose independent rect. 5 21
705 78.22 humidity 70.0 14400 < th dose independent rect. 8 1
706 78.22 temperature 30.0 90 < th dose independent rect. 11 18
714 78.24 humidity 80.0 270 < th dose independent rect. 6 1
723 78.25 humidity 90.0 720 > th dose independent rect. 3 1
730 78.26 humidity 80.0 270 < th dose independent rect. 5 3
731 78.26 atmosphere 1000.0 720 > th dose independent rect. 5 4
738 78.28 wind 9.0 720 < th dose independent rect. 17 12
757 78.31 wind 5.0 14400 > th dose independent rect. 11 4
766 78.32 humidity 80.0 270 < th dose dependent rect. 6 1
770 78.33 wind 5.0 14400 < th dose independent rect. 10 7
796 78.36 wind 5.0 14400 > th dose independent rect. 10 7
797 78.36 precipitation 0.1 720 < th dose independent rect. 5 12
798 78.36 wind 1.0 14400 < th dose dependent rect. 6 1
799 78.36 precipitation 0.1 720 < th dose dependent rect. 5 12
802 78.37 atmosphere 995.0 720 > th dose independent rect. 17 20
806 78.38 radiation 20.0 720 < th dose independent rect. 17 12
808 78.39 precipitation 0.1 720 < th dose independent rect. 13 4
811 78.39 precipitation 0.1 720 < th dose dependent rect. 13 4
819 78.41 wind 9.0 720 < th dose independent rect. 1 4
821 78.41 humidity 80.0 4320 < th dose independent rect. 5 6
823 78.41 humidity 90.0 720 < th dose independent rect. 24 10
824 78.41 humidity 50.0 1440 > th dose dependent rect. 2 1
832 78.42 temperature 10.0 720 > th dose independent rect. 1 4
833 78.42 temperature 30.0 720 < th dose independent rect. 1 4
834 78.42 humidity 50.0 720 > th dose independent rect. 1 4
837 78.42 atmosphere 995.0 720 > th dose independent rect. 1 4
838 78.42 radiation 20.0 720 < th dose independent rect. 1 4
860 78.44 radiation 1.0 30 < th dose independent rect. 19 21
871 78.45 atmosphere 1000.0 10 > th dose independent rect. 21 23
876 78.46 temperature 10.0 720 > th dose independent rect. 13 4
878 78.46 atmosphere 1015.0 720 < th dose independent rect. 13 4
880 78.46 temperature 10.0 720 > th dose independent rect. 17 20
890 78.47 temperature 10.0 720 > th dose independent rect. 5 12
891 78.47 temperature 10.0 720 > th dose independent rect. 17 12
892 78.47 atmosphere 1015.0 720 < th dose independent rect. 5 12
901 78.47 radiation 40.0 720 < th dose dependent rect. 1 4
902 78.47 humidity 70.0 4320 > th dose dependent rect. 3 8
903 78.47 radiation 40.0 720 < th dose dependent rect. 17 12
906 78.48 radiation 1.0 90 > th dose independent no NA NA
907 78.48 radiation 1.0 90 < th dose independent no NA NA
921 78.48 radiation 1.0 90 > th dose independent rect. 4 15
971 78.49 wind 5.0 14400 > th dose independent rect. 11 1
974 78.49 atmosphere 995.0 720 > th dose independent rect. 17 12
975 78.49 atmosphere 1000.0 90 > th dose independent rect. 11 18
976 78.49 radiation 1.0 90 > th dose independent rect. 16 19
977 78.49 radiation 1.0 90 < th dose independent rect. 11 23
986 78.49 radiation 1.0 30 < th dose dependent rect. 2 19
988 78.50 humidity 80.0 1440 > th dose independent rect. 23 4
991 78.50 atmosphere 1000.0 720 > th dose independent rect. 21 12