Os05g0114800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
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Os05g0114800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, putative npRNA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 178.89 | 0.628 | 7.28 | 0.348 | 0.728 | -1.69 | -1.15 | 0.827 | 0.759 | 5.55 | 19.62 | 3354 | -- | -- |
| 179.2 | 0.623 | 7.25 | 0.347 | 0.691 | -1.95 | -1.11 | -- | 0.774 | 5.49 | 19.2 | 4302 | -- | -- |
| 182.09 | 0.628 | 7.28 | 0.338 | 0.72 | -1.69 | -- | 0.849 | 0.759 | 5.63 | 19.61 | 3309 | -- | -- |
| 181.89 | 0.628 | 7.26 | 0.326 | 0.667 | -1.94 | -- | -- | 0.779 | 5.76 | 19.2 | 4185 | -- | -- |
| 205.25 | 0.667 | 7.29 | 0.291 | -- | -1.91 | -- | 0.458 | 0.757 | -- | 19.39 | 4084 | -- | -- |
| 236.95 | 0.722 | 7.16 | 1.48 | 0.728 | -- | -1.28 | -- | 1.23 | 5.41 | -- | -- | -- | -- |
| 240.95 | 0.727 | 7.15 | 1.48 | 0.723 | -- | -- | -- | 1.23 | 5.61 | -- | -- | -- | -- |
| 204.67 | 0.666 | 7.27 | 0.304 | -- | -2.06 | -- | -- | 0.784 | -- | 18.8 | 4183 | -- | -- |
| 183.05 | 0.63 | 7.27 | -- | 0.699 | -2.12 | -- | -- | 0.704 | 5.87 | 18.9 | 5332 | -- | -- |
| 268.06 | 0.765 | 7.16 | 1.5 | -- | -- | -- | -- | 1.25 | -- | -- | -- | -- | -- |
| 298.45 | 0.808 | 7.19 | -- | 0.747 | -- | -- | -- | 1.07 | 5.52 | -- | -- | -- | -- |
| 206.2 | 0.669 | 7.28 | -- | -- | -2.26 | -- | -- | 0.719 | -- | 18.89 | 4195 | -- | -- |
| 327.45 | 0.845 | 7.2 | -- | -- | -- | -- | -- | 1.08 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 170.87 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 2 | 171.32 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 11 | 174.67 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 14 | 174.82 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 19 | 174.97 | radiation | 30 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 28 | 175.23 | wind | 1 | 14400 | < th | dose dependent | rect. | 22 | 4 |
| 38 | 175.62 | radiation | 40 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 58 | 176.14 | radiation | 30 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 69 | 176.50 | radiation | 40 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 75 | 176.59 | radiation | 30 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 88 | 176.84 | radiation | 10 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 100 | 177.07 | radiation | 40 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 133 | 177.69 | radiation | 20 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 168 | 178.00 | radiation | 40 | 43200 | < th | dose dependent | rect. | 10 | 4 |
| 174 | 178.04 | radiation | 10 | 43200 | > th | dose dependent | rect. | 11 | 3 |
| 215 | 178.33 | temperature | 20 | 4320 | < th | dose independent | rect. | 15 | 16 |
| 217 | 178.35 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 245 | 178.54 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 253 | 178.55 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 12 |
| 287 | 178.73 | temperature | 20 | 4320 | < th | dose independent | sin | 14 | NA |
| 298 | 178.77 | temperature | 20 | 4320 | > th | dose independent | rect. | 14 | 17 |
| 312 | 178.86 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 12 |
| 354 | 179.10 | temperature | 20 | 4320 | > th | dose independent | sin | 14 | NA |
| 367 | 179.16 | radiation | 30 | 43200 | < th | dose independent | sin | 5 | NA |
| 472 | 179.54 | wind | 1 | 14400 | < th | dose independent | rect. | 22 | 4 |
| 733 | 180.16 | humidity | 60 | 43200 | < th | dose independent | rect. | 21 | 13 |
| 913 | 180.41 | radiation | 30 | 43200 | < th | dose independent | no | NA | NA |