Os05g0113300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Sodium/hydrogen exchanger family protein.
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Os05g0113300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Sodium/hydrogen exchanger family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 160.98 | 0.596 | 8.7 | -0.674 | 1.52 | -1.11 | -0.871 | 2.04 | -0.748 | 6.68 | 29.7 | 5815 | -- | -- |
| 162.49 | 0.594 | 8.68 | -0.147 | 1.51 | -0.914 | -0.852 | -- | -0.769 | 6.74 | 29.3 | 5782 | -- | -- |
| 162.74 | 0.594 | 8.7 | -0.731 | 1.5 | -1.13 | -- | 2.32 | -0.732 | 6.71 | 29.7 | 5808 | -- | -- |
| 164.38 | 0.597 | 8.66 | -0.184 | 1.52 | -0.932 | -- | -- | -0.756 | 6.79 | 29.23 | 5789 | -- | -- |
| 280.14 | 0.78 | 8.7 | -0.749 | -- | -1.26 | -- | 2.54 | -0.637 | -- | 29.7 | 5700 | -- | -- |
| 202.76 | 0.668 | 8.64 | 0.147 | 1.57 | -- | -0.89 | -- | -0.686 | 6.66 | -- | -- | -- | -- |
| 204.75 | 0.67 | 8.64 | 0.134 | 1.56 | -- | -- | -- | -0.683 | 6.69 | -- | -- | -- | -- |
| 282.51 | 0.783 | 8.65 | -0.164 | -- | -1.01 | -- | -- | -0.58 | -- | 29.7 | 5709 | -- | -- |
| 165.15 | 0.599 | 8.65 | -- | 1.54 | -0.893 | -- | -- | -0.731 | 6.76 | 29.25 | 5789 | -- | -- |
| 332.04 | 0.851 | 8.67 | 0.17 | -- | -- | -- | -- | -0.652 | -- | -- | -- | -- | -- |
| 205.23 | 0.67 | 8.64 | -- | 1.56 | -- | -- | -- | -0.698 | 6.69 | -- | -- | -- | -- |
| 282.88 | 0.783 | 8.65 | -- | -- | -0.989 | -- | -- | -0.574 | -- | 29.81 | 5712 | -- | -- |
| 332.8 | 0.852 | 8.68 | -- | -- | -- | -- | -- | -0.671 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 159.24 | humidity | 9e+01 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 2 | 159.53 | humidity | 5e+01 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 6 | 160.49 | radiation | 2e+01 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 28 | 161.37 | humidity | 7e+01 | 14400 | > th | dose independent | rect. | 14 | 5 |
| 50 | 162.22 | humidity | 7e+01 | 14400 | > th | dose independent | rect. | 14 | 15 |
| 51 | 162.23 | humidity | 7e+01 | 14400 | > th | dose independent | rect. | 14 | 10 |
| 79 | 162.51 | humidity | 7e+01 | 14400 | < th | dose independent | rect. | 14 | 5 |
| 86 | 162.65 | humidity | 7e+01 | 14400 | > th | dose independent | rect. | 9 | 10 |
| 90 | 162.70 | humidity | 8e+01 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 93 | 162.73 | humidity | 8e+01 | 14400 | > th | dose independent | rect. | 17 | 4 |
| 115 | 162.92 | humidity | 6e+01 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 123 | 162.97 | humidity | 7e+01 | 14400 | > th | dose independent | sin | 17 | NA |
| 199 | 163.31 | radiation | 3e+01 | 4320 | > th | dose independent | rect. | 15 | 17 |
| 216 | 163.40 | humidity | 8e+01 | 14400 | < th | dose independent | rect. | 17 | 4 |
| 219 | 163.42 | humidity | 7e+01 | 14400 | > th | dose independent | rect. | 9 | 17 |
| 233 | 163.46 | humidity | 8e+01 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 286 | 163.79 | humidity | 7e+01 | 14400 | > th | dose independent | rect. | 24 | 19 |
| 296 | 163.82 | humidity | 7e+01 | 14400 | < th | dose independent | sin | 17 | NA |
| 314 | 163.92 | humidity | 5e+01 | 14400 | > th | dose dependent | rect. | 12 | 11 |
| 341 | 164.00 | humidity | 9e+01 | 14400 | < th | dose dependent | rect. | 12 | 10 |
| 427 | 164.19 | humidity | 6e+01 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 496 | 164.39 | humidity | 5e+01 | 14400 | > th | dose dependent | sin | 17 | NA |
| 517 | 164.43 | humidity | 9e+01 | 14400 | < th | dose dependent | sin | 17 | NA |
| 569 | 164.54 | humidity | 7e+01 | 14400 | > th | dose independent | no | NA | NA |
| 647 | 164.63 | temperature | 3e+01 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 721 | 164.86 | humidity | 8e+01 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 737 | 164.91 | humidity | 7e+01 | 14400 | > th | dose independent | rect. | 18 | 23 |
| 755 | 164.95 | temperature | 3e+01 | 4320 | < th | dose independent | rect. | 14 | 2 |
| 781 | 164.99 | atmosphere | 1e+03 | 43200 | < th | dose dependent | rect. | 4 | 11 |
| 818 | 165.09 | atmosphere | 1e+03 | 43200 | < th | dose dependent | sin | 1 | NA |
| 874 | 165.21 | atmosphere | 1e+03 | 43200 | < th | dose independent | rect. | 11 | 2 |
| 879 | 165.22 | humidity | 8e+01 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 950 | 165.34 | precipitation | 1e-01 | 43200 | > th | dose dependent | rect. | 5 | 16 |
| 954 | 165.35 | humidity | 8e+01 | 14400 | < th | dose dependent | rect. | 12 | 3 |
| 960 | 165.36 | atmosphere | 1e+03 | 43200 | > th | dose independent | rect. | 11 | 2 |