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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0110900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Protein kinase APK1B, chloroplast precursor (EC 2.7.1.-).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.9 (0.0199) R2 : 0.524
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.11 (0.0498) R2dC : 0.516 R2C : 0.509
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.142 (0.042) R2dN8 : 0.0155 R2N8 : 0.00799
σ : 0.376
deviance : 64.77
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_____
C
peak time of C : 3.03
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
51.97 0.339 11.9 0.148 1.23 -0.836 -0.627 1.45 -0.181 2.63 75.85 1070 -- --
53.54 0.341 11.9 0.0421 1.23 -0.763 -0.416 -- -0.176 2.49 82.48 1044 -- --
53.19 0.34 11.9 0.132 1.23 -0.832 -- 1.03 -0.167 2.48 79.01 1046 -- --
54.11 0.343 11.9 0.0479 1.23 -0.755 -- -- -0.171 2.51 81.94 1063 -- --
85.86 0.432 11.9 -0.0245 -- -1.32 -- 0.652 -0.0825 -- 162.3 122 -- --
63.64 0.374 11.9 -0.0728 1.11 -- -0.564 -- -0.153 3.08 -- -- -- --
64.67 0.377 11.9 -0.0608 1.11 -- -- -- -0.149 3.03 -- -- -- --
86.43 0.433 11.9 -0.0203 -- -1.27 -- -- -0.12 -- 172 121 -- --
54.17 0.343 11.9 -- 1.23 -0.754 -- -- -0.173 2.46 82.78 1045 -- --
135.06 0.543 11.9 -0.0136 -- -- -- -- -0.12 -- -- -- -- --
64.77 0.376 11.9 -- 1.11 -- -- -- -0.142 3.03 -- -- -- --
86.45 0.433 11.9 -- -- -1.27 -- -- -0.118 -- 219.3 121 -- --
135.07 0.542 11.9 -- -- -- -- -- -0.119 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 47.73 humidity 70 720 > th dose independent rect. 15 14
2 47.77 humidity 70 720 > th dose independent rect. 15 5
10 48.39 humidity 60 720 > th dose dependent rect. 17 3
15 48.69 humidity 70 720 > th dose dependent rect. 19 1
21 48.96 humidity 70 720 > th dose independent sin 14 NA
42 49.59 radiation 10 720 < th dose dependent rect. 14 13
47 49.61 humidity 70 720 < th dose independent sin 14 NA
53 49.76 humidity 70 720 < th dose independent rect. 14 18
63 49.86 humidity 70 720 < th dose independent rect. 14 6
80 50.02 radiation 10 720 < th dose dependent rect. 14 5
81 50.04 temperature 30 720 < th dose independent rect. 17 10
84 50.13 humidity 70 720 > th dose independent rect. 15 18
126 50.42 temperature 30 720 < th dose independent rect. 17 2
173 50.88 radiation 10 720 < th dose dependent sin 19 NA
183 50.93 humidity 80 720 > th dose independent rect. 11 11
184 50.96 radiation 10 720 < th dose dependent sin 16 NA
203 51.08 radiation 10 720 < th dose independent rect. 14 13
241 51.36 radiation 10 720 < th dose independent rect. 14 6
284 51.56 humidity 80 720 < th dose dependent rect. 18 14
293 51.60 humidity 80 720 < th dose dependent sin 12 NA
303 51.65 humidity 80 720 < th dose dependent rect. 18 6
371 51.94 humidity 70 720 > th dose dependent rect. 11 10
435 52.13 humidity 60 720 > th dose dependent sin 18 NA
458 52.17 radiation 1 720 < th dose independent rect. 11 16
521 52.39 radiation 1 720 < th dose independent rect. 11 8
567 52.48 humidity 90 720 < th dose dependent rect. 14 9
586 52.53 radiation 10 720 < th dose independent rect. 14 9
692 52.73 radiation 10 720 > th dose independent sin 16 NA
708 52.76 radiation 10 720 < th dose independent sin 15 NA
770 52.88 radiation 10 720 > th dose independent rect. 11 19
776 52.89 radiation 10 720 > th dose independent rect. 11 7
813 52.93 humidity 50 720 > th dose dependent rect. 15 14
816 52.94 humidity 70 720 > th dose independent rect. 24 20
992 53.24 humidity 70 720 > th dose independent no NA NA