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Os05g0109600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Armadillo-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.11 (0.0232) R2 : 0.689
β1 : 1.75 (0.0847) R2dD : 0.301 R2D : 0.242
β2 : 1.45 (0.06) R2dC : 0.399 R2C : 0.369
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.42 (0.0494) R2dN8 : 0.066 R2N8 : -0.00413
σ : 0.435
deviance : 86.34
__
_____
C
peak time of C : 19.1
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
76.24 0.41 9.12 1.65 1.44 0.687 0.0698 0.422 0.365 20.8 10.23 228 -- --
76.83 0.408 9.12 1.63 1.44 0.687 -0.132 -- 0.355 20.8 10.22 227 -- --
76.25 0.407 9.12 1.65 1.44 0.689 -- 0.394 0.364 20.8 10.23 228 -- --
76.89 0.408 9.12 1.64 1.44 0.697 -- -- 0.358 20.8 10.23 228 -- --
105.06 0.477 9.05 1.42 -- 1.5 -- 1.44 0.437 -- 0.06004 757 -- --
86.28 0.435 9.11 1.75 1.45 -- 0.158 -- 0.42 19 -- -- -- --
86.34 0.435 9.11 1.75 1.45 -- -- -- 0.42 19.1 -- -- -- --
95.91 0.456 9.09 1.64 -- 1.9 -- -- 0.319 -- 2.3 851 -- --
147.59 0.566 9.21 -- 1.55 0.927 -- -- 0.245 21.4 10.22 228 -- --
196.6 0.655 9.08 1.72 -- -- -- -- 0.394 -- -- -- -- --
167.03 0.605 9.15 -- 1.43 -- -- -- 0.225 19.1 -- -- -- --
162.39 0.594 9.12 -- -- 2.04 -- -- 0.17 -- 0.1205 875 -- --
274.75 0.774 9.12 -- -- -- -- -- 0.203 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 69.71 temperature 10.0 270 > th dose dependent rect. 7 8
4 70.76 wind 7.0 270 < th dose independent rect. 7 9
8 71.21 radiation 1.0 30 < th dose independent rect. 23 7
10 71.48 radiation 1.0 30 < th dose dependent rect. 23 7
20 71.55 radiation 1.0 30 < th dose dependent rect. 23 17
31 71.65 radiation 40.0 270 < th dose dependent rect. 15 16
53 72.05 radiation 20.0 270 < th dose independent rect. 15 16
80 72.57 temperature 15.0 270 > th dose independent rect. 7 9
88 72.69 radiation 20.0 270 < th dose dependent rect. 3 16
94 72.85 precipitation 0.1 270 < th dose independent rect. 7 9
95 72.85 precipitation 0.1 270 < th dose dependent rect. 7 9
99 72.94 temperature 30.0 270 < th dose dependent rect. 21 6
100 72.99 temperature 10.0 270 > th dose independent rect. 20 7
101 72.99 temperature 30.0 270 < th dose independent rect. 20 7
102 72.99 humidity 50.0 270 > th dose independent rect. 20 7
105 72.99 atmosphere 995.0 270 > th dose independent rect. 20 7
106 72.99 radiation 1.0 270 < th dose independent rect. 20 7
111 72.99 temperature 10.0 270 > th dose independent rect. 3 17
112 72.99 atmosphere 1015.0 270 < th dose independent rect. 3 17
113 72.99 radiation 1.0 270 < th dose dependent rect. 20 7
118 73.00 precipitation 0.1 270 < th dose independent rect. 20 7
119 73.00 precipitation 0.1 270 < th dose dependent rect. 20 7
120 73.03 wind 9.0 270 < th dose independent rect. 20 7
123 73.08 atmosphere 1015.0 270 < th dose independent rect. 7 9
124 73.08 temperature 10.0 270 > th dose independent rect. 16 15
132 73.16 radiation 20.0 30 < th dose dependent rect. 6 17
138 73.19 wind 1.0 30 > th dose independent rect. 23 7
144 73.24 atmosphere 995.0 90 > th dose independent rect. 17 15
151 73.29 wind 1.0 270 > th dose independent rect. 7 9
159 73.34 wind 9.0 270 < th dose independent rect. 16 15
163 73.35 temperature 30.0 10 < th dose dependent rect. 23 7
174 73.43 humidity 50.0 90 > th dose independent rect. 17 15
175 73.44 atmosphere 995.0 270 > th dose independent rect. 3 17
194 73.49 precipitation 0.1 270 < th dose independent rect. 3 17
195 73.49 precipitation 0.1 270 < th dose dependent rect. 3 17
207 73.56 humidity 90.0 90 < th dose independent rect. 8 9
210 73.58 radiation 40.0 270 < th dose dependent rect. 2 8
221 73.68 radiation 1.0 270 > th dose independent rect. 7 9
226 73.69 atmosphere 1015.0 270 < th dose independent rect. 2 19
246 73.75 temperature 10.0 30 > th dose independent rect. 23 5
247 73.75 temperature 30.0 30 < th dose independent rect. 23 5
248 73.75 humidity 50.0 30 > th dose independent rect. 23 5
251 73.75 atmosphere 995.0 30 > th dose independent rect. 23 5
252 73.75 radiation 1.0 30 < th dose independent rect. 23 5
260 73.75 temperature 10.0 30 > th dose independent rect. 4 19
262 73.75 atmosphere 1015.0 30 < th dose independent rect. 4 19
263 73.75 radiation 1.0 30 < th dose dependent rect. 23 5
269 73.76 wind 9.0 30 < th dose independent rect. 23 5
287 73.83 temperature 25.0 270 < th dose independent rect. 2 9
288 73.83 radiation 10.0 30 < th dose independent rect. 6 17
289 73.83 humidity 50.0 30 > th dose dependent rect. 23 5
326 73.92 atmosphere 995.0 270 > th dose independent rect. 7 9
327 73.95 precipitation 0.1 30 < th dose independent rect. 23 5
328 73.95 atmosphere 995.0 30 > th dose independent rect. 4 19
329 73.95 precipitation 0.1 30 < th dose dependent rect. 23 5
330 73.96 precipitation 0.1 270 < th dose independent rect. 16 15
331 73.96 precipitation 0.1 270 < th dose dependent rect. 16 15
333 73.97 precipitation 0.1 270 < th dose independent rect. 21 5
335 73.97 precipitation 0.1 270 < th dose dependent rect. 21 5
339 73.98 temperature 10.0 270 > th dose independent rect. 21 5
340 73.98 temperature 30.0 270 < th dose independent rect. 21 5
341 73.98 humidity 50.0 270 > th dose independent rect. 21 5
344 73.98 atmosphere 995.0 270 > th dose independent rect. 21 5
345 73.98 radiation 1.0 270 < th dose independent rect. 21 5
350 73.98 temperature 10.0 270 > th dose independent rect. 2 19
351 73.98 radiation 1.0 270 < th dose dependent rect. 21 5
363 74.00 wind 9.0 270 < th dose independent rect. 21 5
377 74.04 radiation 30.0 90 < th dose dependent rect. 4 19
380 74.06 temperature 30.0 270 < th dose dependent rect. 23 2
381 74.07 precipitation 0.1 10 < th dose independent rect. 5 18
384 74.07 precipitation 0.1 10 < th dose dependent rect. 5 18
396 74.13 humidity 50.0 270 > th dose dependent rect. 20 7
414 74.15 humidity 50.0 270 > th dose dependent rect. 21 5
437 74.18 atmosphere 1015.0 90 < th dose independent rect. 17 15
454 74.20 wind 9.0 270 < th dose independent rect. 3 17
463 74.22 wind 7.0 270 < th dose independent rect. 21 17
500 74.32 radiation 10.0 270 < th dose independent rect. 2 18
526 74.36 radiation 10.0 270 > th dose independent rect. 17 22
557 74.38 atmosphere 995.0 270 > th dose independent rect. 2 19
564 74.39 radiation 10.0 270 < th dose independent rect. 3 16
584 74.42 humidity 50.0 270 > th dose independent rect. 7 8
593 74.44 wind 9.0 30 < th dose independent rect. 4 19
594 74.44 precipitation 0.1 270 < th dose independent rect. 2 19
597 74.44 precipitation 0.1 270 < th dose dependent rect. 2 19
605 74.47 radiation 20.0 90 < th dose independent rect. 4 19
624 74.50 radiation 10.0 30 < th dose independent rect. 9 14
627 74.50 wind 7.0 30 < th dose independent rect. 23 18
667 74.55 radiation 40.0 90 < th dose dependent rect. 13 10
680 74.58 radiation 1.0 90 > th dose independent sin 9 NA
686 74.60 radiation 1.0 90 < th dose dependent sin 10 NA
711 74.66 temperature 30.0 10 < th dose independent rect. 5 18
727 74.70 wind 7.0 270 < th dose independent rect. 9 17
759 74.75 humidity 50.0 270 > th dose dependent rect. 23 1
774 74.77 temperature 25.0 10 < th dose independent rect. 22 9
875 74.87 radiation 20.0 90 < th dose independent rect. 13 10
899 74.89 radiation 10.0 270 > th dose independent sin 2 NA
900 74.89 radiation 1.0 90 < th dose independent sin 10 NA
905 74.90 wind 9.0 270 < th dose independent rect. 23 1
906 74.90 temperature 10.0 270 > th dose independent rect. 23 1
907 74.90 temperature 30.0 270 < th dose independent rect. 23 1
908 74.90 humidity 50.0 270 > th dose independent rect. 23 1
911 74.90 atmosphere 995.0 270 > th dose independent rect. 23 1
912 74.90 radiation 1.0 270 < th dose independent rect. 23 1
918 74.90 temperature 10.0 270 > th dose independent rect. 24 23
920 74.90 radiation 1.0 270 < th dose dependent rect. 23 1
928 74.91 precipitation 0.1 270 < th dose independent rect. 23 1
929 74.91 precipitation 0.1 270 < th dose dependent rect. 23 1
933 74.93 temperature 10.0 1440 > th dose independent rect. 24 7
936 74.93 temperature 30.0 1440 < th dose independent rect. 24 7
940 74.93 humidity 50.0 1440 > th dose independent rect. 24 7
945 74.93 atmosphere 995.0 1440 > th dose independent rect. 24 7
946 74.93 radiation 40.0 1440 < th dose independent rect. 24 7
950 74.93 temperature 10.0 1440 > th dose independent rect. 7 17
986 74.97 wind 1.0 30 > th dose independent rect. 6 17