Os05g0108100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF707 family protein.
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Os05g0108100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF707 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.74 | 0.281 | 13.1 | -0.114 | 2.1 | 1.24 | -0.369 | 1.17 | 0.123 | 6.36 | 24.66 | 797 | -- | -- |
| 37.5 | 0.285 | 13 | 0.0673 | 2.09 | 1.11 | -0.165 | -- | 0.168 | 6.36 | 25 | 772 | -- | -- |
| 36.03 | 0.28 | 13.1 | -0.112 | 2.12 | 1.26 | -- | 1.18 | 0.125 | 6.35 | 24.45 | 863 | -- | -- |
| 37.59 | 0.286 | 13 | 0.0779 | 2.09 | 1.11 | -- | -- | 0.168 | 6.36 | 25 | 777 | -- | -- |
| 176.45 | 0.619 | 13 | 0.286 | -- | 2.77 | -- | 0.885 | 0.402 | -- | 31.78 | 423 | -- | -- |
| 55.81 | 0.35 | 13.1 | -0.234 | 2.17 | -- | -0.208 | -- | -0.0655 | 6.61 | -- | -- | -- | -- |
| 55.92 | 0.35 | 13.1 | -0.238 | 2.17 | -- | -- | -- | -0.0648 | 6.61 | -- | -- | -- | -- |
| 176.87 | 0.619 | 13 | 0.433 | -- | 2.79 | -- | -- | 0.407 | -- | 32.24 | 418 | -- | -- |
| 37.73 | 0.286 | 13 | -- | 2.09 | 1.08 | -- | -- | 0.153 | 6.37 | 24.99 | 769 | -- | -- |
| 300.74 | 0.81 | 13.1 | -0.186 | -- | -- | -- | -- | -0.0209 | -- | -- | -- | -- | -- |
| 57.41 | 0.354 | 13.1 | -- | 2.16 | -- | -- | -- | -0.0384 | 6.62 | -- | -- | -- | -- |
| 181.53 | 0.628 | 13 | -- | -- | 2.67 | -- | -- | 0.358 | -- | 32.59 | 414 | -- | -- |
| 301.65 | 0.811 | 13.1 | -- | -- | -- | -- | -- | -0.000345 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.77 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 13 |
| 2 | 34.04 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 11 |
| 9 | 34.73 | temperature | 15 | 270 | > th | dose dependent | sin | 6 | NA |
| 16 | 34.80 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 21 |
| 17 | 34.84 | temperature | 30 | 270 | < th | dose dependent | sin | 5 | NA |
| 18 | 34.84 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 12 |
| 27 | 34.91 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 17 |
| 160 | 35.89 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 209 | 36.27 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 227 | 36.35 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 245 | 36.44 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 6 |
| 357 | 37.20 | temperature | 20 | 1440 | > th | dose independent | sin | 9 | NA |
| 361 | 37.22 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 16 |
| 362 | 37.23 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 378 | 37.27 | temperature | 20 | 1440 | > th | dose independent | rect. | 17 | 14 |
| 383 | 37.29 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 12 |
| 430 | 37.39 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 19 |
| 444 | 37.43 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 11 |
| 448 | 37.44 | temperature | 20 | 1440 | < th | dose independent | sin | 9 | NA |
| 478 | 37.49 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 15 |
| 495 | 37.51 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 501 | 37.53 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 570 | 37.63 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 607 | 37.67 | temperature | 20 | 1440 | > th | dose independent | rect. | 9 | 22 |
| 649 | 37.71 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 6 |
| 664 | 37.73 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 6 |
| 710 | 37.77 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 6 |
| 725 | 37.78 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 9 |
| 746 | 37.79 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 18 |
| 862 | 37.89 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 897 | 37.91 | temperature | 20 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 905 | 37.92 | temperature | 20 | 1440 | < th | dose independent | rect. | 11 | 20 |
| 915 | 37.93 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |