Os05g0107000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
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Os05g0107000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 157.18 | 0.589 | 6.05 | 2.28 | 3.31 | 1.43 | 0.861 | -0.16 | 0.197 | 19.1 | 2.222 | 293 | -- | -- |
| 157.04 | 0.584 | 6.05 | 2.28 | 3.27 | 1.46 | 0.845 | -- | 0.192 | 19.1 | 2.096 | 311 | -- | -- |
| 158.85 | 0.587 | 6.05 | 2.27 | 3.28 | 1.43 | -- | -0.0227 | 0.192 | 19 | 3.444 | 312 | -- | -- |
| 158.81 | 0.587 | 6.05 | 2.26 | 3.26 | 1.42 | -- | -- | 0.19 | 19 | 3.567 | 320 | -- | -- |
| 388.67 | 0.918 | 5.94 | 2.18 | -- | 3.24 | -- | 3.63 | -0.243 | -- | -71.72 | 717 | -- | -- |
| 183.18 | 0.634 | 6.03 | 2.33 | 3.76 | -- | 0.874 | -- | 0.302 | 18.2 | -- | -- | -- | -- |
| 185.05 | 0.637 | 6.02 | 2.32 | 3.77 | -- | -- | -- | 0.305 | 18.2 | -- | -- | -- | -- |
| 342.25 | 0.862 | 6.04 | 2.03 | -- | 4 | -- | -- | -0.157 | -- | -70.6 | 701 | -- | -- |
| 290.64 | 0.794 | 6.11 | -- | 3.12 | 1.59 | -- | -- | -0.0814 | 19 | 10.2 | 365 | -- | -- |
| 920.61 | 1.42 | 5.96 | 2.22 | -- | -- | -- | -- | 0.223 | -- | -- | -- | -- | -- |
| 327.22 | 0.846 | 6.08 | -- | 3.73 | -- | -- | -- | 0.0466 | 18.3 | -- | -- | -- | -- |
| 450.52 | 0.989 | 6.09 | -- | -- | 4.07 | -- | -- | -0.389 | -- | -61.66 | 702 | -- | -- |
| 1050.57 | 1.51 | 6.01 | -- | -- | -- | -- | -- | -0.0234 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 147.62 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 7 |
| 6 | 150.99 | humidity | 70 | 90 | > th | dose independent | rect. | 6 | 16 |
| 10 | 151.43 | radiation | 40 | 90 | < th | dose independent | rect. | 6 | 17 |
| 12 | 152.09 | humidity | 50 | 90 | > th | dose dependent | rect. | 6 | 16 |
| 16 | 152.90 | radiation | 20 | 270 | < th | dose independent | rect. | 5 | 16 |
| 17 | 153.12 | radiation | 40 | 270 | < th | dose dependent | rect. | 5 | 16 |
| 27 | 153.58 | radiation | 20 | 270 | < th | dose independent | rect. | 15 | 20 |
| 46 | 154.02 | radiation | 40 | 270 | < th | dose dependent | rect. | 14 | 21 |
| 77 | 155.09 | radiation | 40 | 270 | < th | dose dependent | rect. | 3 | 23 |
| 78 | 155.11 | radiation | 1 | 270 | > th | dose dependent | rect. | 8 | 10 |
| 80 | 155.13 | radiation | 1 | 270 | > th | dose dependent | rect. | 8 | 21 |
| 130 | 155.61 | radiation | 20 | 270 | < th | dose independent | rect. | 3 | 22 |
| 144 | 155.79 | humidity | 50 | 30 | > th | dose dependent | rect. | 6 | 6 |
| 154 | 156.01 | temperature | 10 | 270 | > th | dose dependent | rect. | 18 | 14 |
| 160 | 156.08 | radiation | 40 | 270 | < th | dose independent | rect. | 3 | 23 |
| 164 | 156.13 | radiation | 1 | 270 | > th | dose dependent | sin | 23 | NA |
| 207 | 156.57 | radiation | 40 | 270 | < th | dose independent | rect. | 3 | 8 |
| 208 | 156.58 | humidity | 70 | 270 | > th | dose independent | rect. | 4 | 16 |
| 210 | 156.62 | temperature | 25 | 90 | < th | dose independent | rect. | 23 | 7 |
| 216 | 156.69 | radiation | 40 | 90 | < th | dose independent | rect. | 6 | 7 |
| 230 | 156.93 | humidity | 70 | 90 | > th | dose independent | rect. | 6 | 7 |
| 237 | 156.99 | radiation | 40 | 270 | < th | dose dependent | sin | 23 | NA |
| 291 | 157.35 | radiation | 40 | 270 | < th | dose dependent | rect. | 4 | 8 |
| 317 | 157.49 | radiation | 20 | 270 | < th | dose independent | rect. | 4 | 7 |
| 349 | 157.65 | temperature | 10 | 270 | > th | dose dependent | rect. | 8 | 9 |
| 354 | 157.68 | radiation | 1 | 270 | > th | dose dependent | rect. | 4 | 14 |
| 365 | 157.69 | radiation | 20 | 270 | > th | dose independent | rect. | 9 | 22 |
| 378 | 157.70 | radiation | 20 | 270 | > th | dose independent | rect. | 9 | 8 |
| 410 | 157.72 | radiation | 1 | 270 | > th | dose dependent | no | NA | NA |
| 599 | 158.02 | radiation | 20 | 270 | > th | dose independent | sin | 23 | NA |
| 604 | 158.09 | temperature | 10 | 270 | > th | dose dependent | rect. | 9 | 7 |
| 606 | 158.10 | radiation | 20 | 270 | < th | dose independent | rect. | 24 | 23 |
| 618 | 158.18 | humidity | 90 | 270 | < th | dose dependent | rect. | 9 | 6 |
| 698 | 158.46 | radiation | 20 | 270 | < th | dose independent | sin | 23 | NA |
| 703 | 158.49 | radiation | 20 | 270 | < th | dose independent | no | NA | NA |
| 711 | 158.57 | radiation | 40 | 270 | < th | dose dependent | no | NA | NA |
| 717 | 158.63 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 22 | 8 |
| 724 | 158.68 | radiation | 10 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 746 | 158.80 | temperature | 30 | 90 | < th | dose independent | rect. | 6 | 16 |
| 747 | 158.80 | humidity | 50 | 90 | > th | dose dependent | rect. | 22 | 8 |
| 806 | 159.00 | radiation | 40 | 90 | < th | dose dependent | rect. | 6 | 7 |
| 830 | 159.08 | radiation | 40 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 831 | 159.09 | radiation | 40 | 270 | < th | dose independent | sin | 0 | NA |
| 840 | 159.13 | temperature | 15 | 1440 | > th | dose independent | rect. | 7 | 16 |
| 863 | 159.18 | radiation | 20 | 270 | > th | dose independent | no | NA | NA |
| 999 | 159.32 | humidity | 70 | 270 | > th | dose independent | rect. | 4 | 8 |