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Os05g0106500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Chaperone protein dnaJ.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.55 (0.0294) R2 : 0.165
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.73 (0.0771) R2dC : 0.165 R2C : 0.164
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0175 (0.0619) R2dN8 : 0.000188 R2N8 : -0.000426
σ : 0.555
deviance : 140.74
__
_____
C
peak time of C : 18.3
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
127.59 0.531 6.57 -0.24 0.722 -0.908 0.446 0.163 -0.108 18.3 999.5 4037 -- --
127.6 0.526 6.57 -0.246 0.722 -0.926 0.446 -- -0.108 18.3 999.4 3991 -- --
128.08 0.527 6.57 -0.246 0.724 -0.911 -- 0.16 -0.106 18.3 999.5 4025 -- --
128.09 0.527 6.57 -0.249 0.724 -0.924 -- -- -0.106 18.3 999.4 4024 -- --
155.28 0.58 6.56 -0.268 -- -0.945 -- 0.0291 -0.118 -- 999.3 4045 -- --
137.8 0.55 6.56 -0.298 0.723 -- 0.452 -- -0.0528 18.3 -- -- -- --
138.31 0.551 6.56 -0.303 0.726 -- -- -- -0.0513 18.3 -- -- -- --
155.28 0.58 6.56 -0.271 -- -0.951 -- -- -0.122 -- 999.3 4053 -- --
129.68 0.53 6.57 -- 0.725 -0.903 -- -- -0.0856 18.3 999.7 4054 -- --
165.64 0.601 6.55 -0.323 -- -- -- -- -0.0668 -- -- -- -- --
140.74 0.555 6.55 -- 0.73 -- -- -- -0.0175 18.3 -- -- -- --
157.15 0.584 6.55 -- -- -0.943 -- -- -0.0954 -- 999.5 4080 -- --
168.39 0.606 6.54 -- -- -- -- -- -0.031 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 117.65 temperature 15.0 10 > th dose dependent rect. 9 6
5 118.27 temperature 15.0 270 > th dose dependent rect. 9 1
25 119.86 temperature 15.0 270 > th dose dependent rect. 8 3
30 120.21 temperature 10.0 10 > th dose dependent rect. 9 17
34 120.69 temperature 10.0 270 > th dose dependent rect. 6 7
44 121.07 humidity 90.0 10 < th dose independent rect. 9 6
49 121.25 temperature 10.0 10 > th dose dependent rect. 9 15
62 121.82 temperature 10.0 10 > th dose dependent rect. 20 19
64 121.85 wind 5.0 270 < th dose independent rect. 9 1
75 121.95 temperature 20.0 10 > th dose independent rect. 9 6
97 122.51 temperature 10.0 43200 > th dose independent rect. 10 6
103 122.59 wind 9.0 270 < th dose dependent rect. 9 1
104 122.61 temperature 10.0 10 > th dose independent rect. 9 6
106 122.61 atmosphere 995.0 10 > th dose independent rect. 9 6
107 122.61 atmosphere 1015.0 10 < th dose independent rect. 9 6
108 122.61 precipitation 0.1 10 < th dose independent rect. 9 6
109 122.61 temperature 10.0 10 > th dose independent rect. 15 18
111 122.61 precipitation 0.1 10 < th dose dependent rect. 9 6
124 122.73 wind 7.0 270 < th dose dependent rect. 8 3
125 122.76 wind 9.0 10 < th dose independent rect. 9 6
131 122.84 wind 1.0 10 > th dose independent rect. 9 6
133 122.85 temperature 10.0 1440 > th dose independent rect. 10 6
136 122.85 temperature 10.0 1440 > th dose independent rect. 16 18
143 122.89 wind 9.0 30 < th dose independent rect. 15 18
145 122.91 wind 5.0 270 < th dose independent rect. 8 3
161 123.13 radiation 1.0 10 > th dose independent rect. 9 6
167 123.16 temperature 10.0 270 > th dose dependent rect. 17 20
173 123.25 radiation 40.0 90 < th dose independent rect. 14 18
184 123.37 precipitation 0.1 10 < th dose independent rect. 15 18
185 123.37 precipitation 0.1 10 < th dose dependent rect. 15 18
217 123.60 temperature 15.0 270 > th dose independent rect. 9 1
220 123.62 radiation 1.0 270 > th dose independent rect. 9 1
221 123.63 humidity 50.0 10 > th dose independent rect. 9 6
229 123.66 atmosphere 995.0 10 > th dose independent rect. 15 18
259 123.84 wind 9.0 270 < th dose dependent rect. 6 7
273 123.96 radiation 40.0 10 < th dose independent rect. 12 21
317 124.16 precipitation 0.1 270 < th dose independent rect. 9 1
319 124.16 precipitation 0.1 270 < th dose dependent rect. 9 1
325 124.17 radiation 40.0 10 < th dose independent rect. 4 16
334 124.22 atmosphere 995.0 270 > th dose independent rect. 9 1
335 124.22 atmosphere 1015.0 270 < th dose independent rect. 9 1
337 124.22 temperature 10.0 270 > th dose independent rect. 10 23
345 124.26 atmosphere 1015.0 10 < th dose independent rect. 15 18
359 124.31 temperature 20.0 270 > th dose independent rect. 6 7
365 124.33 humidity 50.0 270 > th dose independent rect. 9 1
388 124.42 wind 1.0 270 > th dose independent rect. 9 1
390 124.42 wind 1.0 270 > th dose independent rect. 13 17
407 124.51 radiation 40.0 10 < th dose independent rect. 12 8
428 124.66 radiation 40.0 10 < th dose independent rect. 2 18
429 124.67 radiation 1.0 10 > th dose dependent rect. 15 18
448 124.77 wind 5.0 30 < th dose independent rect. 2 7
465 124.87 wind 1.0 270 > th dose independent rect. 11 21
472 124.92 temperature 15.0 30 > th dose independent rect. 9 17
497 125.05 precipitation 0.1 30 < th dose independent rect. 9 17
498 125.05 humidity 50.0 10 > th dose independent rect. 15 18
500 125.05 precipitation 0.1 30 < th dose dependent rect. 9 17
520 125.12 precipitation 0.1 30 < th dose independent rect. 2 7
521 125.12 radiation 1.0 90 > th dose dependent rect. 8 5
523 125.12 precipitation 0.1 30 < th dose dependent rect. 2 7
540 125.18 temperature 20.0 270 > th dose independent rect. 8 3
541 125.18 temperature 15.0 270 > th dose independent rect. 17 9
546 125.20 wind 7.0 270 < th dose independent rect. 6 7
554 125.22 radiation 40.0 90 < th dose independent rect. 11 22
560 125.23 humidity 90.0 270 < th dose independent rect. 9 1
572 125.25 radiation 20.0 270 < th dose independent rect. 17 9
575 125.25 temperature 10.0 270 > th dose independent rect. 2 15
576 125.25 atmosphere 1015.0 270 < th dose independent rect. 2 15
581 125.27 temperature 10.0 1440 > th dose independent rect. 3 7
584 125.27 atmosphere 995.0 1440 > th dose independent rect. 3 7
585 125.27 temperature 10.0 1440 > th dose independent rect. 10 17
594 125.28 temperature 10.0 30 > th dose independent rect. 2 7
596 125.28 temperature 30.0 30 < th dose independent rect. 2 7
597 125.28 humidity 50.0 30 > th dose independent rect. 2 7
599 125.28 atmosphere 995.0 30 > th dose independent rect. 2 7
600 125.28 atmosphere 1015.0 30 < th dose independent rect. 2 7
603 125.29 wind 9.0 270 < th dose independent rect. 17 9
604 125.29 wind 9.0 10 < th dose independent rect. 9 17
607 125.30 precipitation 0.1 270 < th dose independent rect. 17 9
612 125.30 precipitation 0.1 270 < th dose dependent rect. 17 9
628 125.34 radiation 10.0 14400 < th dose dependent rect. 21 6
637 125.36 precipitation 0.1 270 < th dose independent rect. 2 15
638 125.36 radiation 1.0 270 > th dose dependent rect. 9 1
639 125.36 precipitation 0.1 270 < th dose dependent rect. 2 15
645 125.37 temperature 30.0 10 < th dose dependent rect. 4 16
659 125.41 wind 9.0 270 < th dose independent rect. 10 23
691 125.47 radiation 1.0 270 > th dose independent rect. 8 3
712 125.55 humidity 50.0 90 > th dose independent rect. 15 17
733 125.59 atmosphere 995.0 30 > th dose independent rect. 9 17
741 125.60 radiation 40.0 270 < th dose dependent rect. 17 9
749 125.63 temperature 20.0 270 > th dose independent rect. 18 19
782 125.70 wind 9.0 270 < th dose independent rect. 2 15
787 125.72 precipitation 0.1 270 < th dose independent rect. 6 7
788 125.72 precipitation 0.1 270 < th dose dependent rect. 6 7
804 125.75 radiation 40.0 30 < th dose independent rect. 2 7
807 125.76 radiation 1.0 270 > th dose independent rect. 6 7
813 125.77 radiation 1.0 10 > th dose dependent rect. 9 6
814 125.77 temperature 10.0 10 > th dose dependent rect. 2 7
816 125.78 atmosphere 995.0 270 > th dose independent rect. 6 7
817 125.78 atmosphere 1015.0 270 < th dose independent rect. 6 7
834 125.82 atmosphere 995.0 4320 > th dose independent rect. 5 5
836 125.82 radiation 40.0 90 < th dose independent rect. 13 7
846 125.84 humidity 50.0 270 > th dose independent rect. 17 9
869 125.91 humidity 90.0 270 < th dose independent rect. 8 3
873 125.92 temperature 20.0 270 > th dose independent rect. 8 14
874 125.92 humidity 50.0 10 > th dose independent rect. 9 17
884 125.94 precipitation 0.1 270 < th dose independent rect. 8 3
889 125.94 precipitation 0.1 270 < th dose dependent rect. 8 3
894 125.97 atmosphere 995.0 270 > th dose independent rect. 8 3
895 125.97 atmosphere 1015.0 270 < th dose independent rect. 8 3
896 125.97 temperature 10.0 270 > th dose independent rect. 11 21
899 125.98 temperature 15.0 90 > th dose independent rect. 20 17
919 126.03 humidity 50.0 270 > th dose independent rect. 6 7
920 126.03 atmosphere 995.0 270 > th dose independent rect. 2 15
936 126.05 radiation 40.0 10 < th dose independent rect. 24 20
942 126.06 temperature 15.0 10 > th dose independent rect. 20 19
947 126.08 humidity 50.0 270 > th dose independent rect. 8 3
949 126.08 temperature 15.0 10 > th dose dependent rect. 1 14
972 126.13 temperature 15.0 270 > th dose independent rect. 16 23
999 126.19 atmosphere 1010.0 30 < th dose independent rect. 9 17