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Os05g0106200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF6, transmembrane domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.2 (0.0301) R2 : 0.675
β1 : 2.56 (0.109) R2dD : 0.418 R2D : 0.294
β2 : 1.38 (0.0774) R2dC : 0.222 R2C : 0.183
β3 : 0.889 (0.106) R2dE : 0.0622 R2E : 0.0438
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.562 (0.0669) R2dN8 : 0.0744 R2N8 : 0.0307
σ : 0.555
deviance : 141.95
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_____
C
peak time of C : 17.7
E
wheather : precipitation
threshold : 2.006
memory length : 12181
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
140.1 0.556 7.23 2.87 1.34 0.687 -0.00616 4.45 0.679 17.8 0.2033 4693 -- --
144.25 0.559 7.19 2.55 1.39 0.8 -0.169 -- 0.581 17.7 0.8205 12184 -- --
140.1 0.551 7.23 2.87 1.34 0.687 -- 4.45 0.679 17.8 0.2033 4693 -- --
141.95 0.555 7.2 2.56 1.38 0.889 -- -- 0.562 17.7 2.006 12181 -- --
233.4 0.712 7.21 2.85 -- 0.681 -- 4.76 0.656 -- 0.4975 4590 -- --
166.2 0.604 7.16 2.5 1.35 -- 0.168 -- 0.737 17.7 -- -- -- --
166.27 0.604 7.16 2.5 1.36 -- -- -- 0.738 17.7 -- -- -- --
238.21 0.719 7.18 2.54 -- 0.918 -- -- 0.517 -- 3.435 12300 -- --
306.32 0.815 7.23 -- 1.31 0.679 -- -- 0.321 17.9 0.5 13107 -- --
261.58 0.756 7.14 2.46 -- -- -- -- 0.705 -- -- -- -- --
331.43 0.852 7.22 -- 1.32 -- -- -- 0.459 17.8 -- -- -- --
394.12 0.925 7.23 -- -- 0.939 -- -- 0.273 -- 7.103e-06 13068 -- --
421.3 0.958 7.2 -- -- -- -- -- 0.432 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 135.41 wind 3.0 43200 < th dose dependent rect. 8 1
2 136.08 humidity 80.0 14400 > th dose independent rect. 14 4
3 136.09 humidity 80.0 14400 > th dose independent rect. 16 2
4 136.17 humidity 80.0 43200 > th dose independent rect. 2 1
5 136.19 humidity 80.0 14400 < th dose independent rect. 16 1
6 136.28 humidity 80.0 14400 > th dose independent rect. 14 1
9 136.66 humidity 80.0 14400 < th dose independent rect. 14 4
10 136.68 humidity 80.0 14400 < th dose independent rect. 14 1
12 136.72 precipitation 0.1 14400 > th dose dependent rect. 19 6
14 136.89 wind 1.0 43200 < th dose dependent rect. 1 1
15 136.90 radiation 10.0 43200 > th dose independent rect. 9 1
18 136.99 precipitation 0.1 14400 > th dose independent rect. 17 10
19 136.99 precipitation 0.1 14400 < th dose independent rect. 17 10
20 136.99 precipitation 0.1 14400 < th dose dependent rect. 17 10
21 137.00 humidity 80.0 43200 > th dose independent rect. 24 3
22 137.00 humidity 80.0 14400 > th dose dependent rect. 17 1
27 137.10 humidity 80.0 43200 > th dose independent rect. 24 1
34 137.20 humidity 80.0 43200 < th dose dependent rect. 23 9
42 137.36 humidity 80.0 43200 > th dose independent rect. 23 9
48 137.43 humidity 80.0 43200 > th dose independent rect. 24 7
59 137.49 humidity 90.0 43200 < th dose independent rect. 17 3
61 137.51 precipitation 0.1 14400 > th dose independent rect. 18 7
63 137.52 wind 3.0 43200 < th dose independent rect. 8 2
65 137.53 precipitation 0.1 14400 < th dose independent rect. 18 7
66 137.53 precipitation 0.1 14400 < th dose dependent rect. 18 7
69 137.57 humidity 80.0 43200 > th dose independent rect. 2 5
80 137.69 humidity 80.0 43200 < th dose independent rect. 23 9
85 137.72 humidity 80.0 43200 < th dose independent rect. 23 1
87 137.75 wind 3.0 43200 > th dose independent rect. 9 1
103 137.90 precipitation 0.1 14400 > th dose independent rect. 19 2
112 137.96 precipitation 0.1 14400 < th dose independent rect. 19 2
113 137.96 precipitation 0.1 14400 < th dose dependent rect. 19 2
115 137.98 humidity 90.0 43200 > th dose independent rect. 19 1
116 137.98 humidity 80.0 43200 < th dose independent rect. 2 1
118 137.99 humidity 80.0 43200 < th dose independent rect. 2 6
129 138.04 wind 3.0 43200 < th dose independent rect. 6 4
140 138.08 atmosphere 995.0 43200 < th dose dependent rect. 15 1
141 138.09 precipitation 0.1 14400 > th dose independent sin 15 NA
144 138.10 humidity 80.0 43200 < th dose independent rect. 23 4
145 138.11 precipitation 0.1 14400 < th dose independent sin 15 NA
146 138.11 precipitation 0.1 14400 < th dose dependent sin 15 NA
148 138.12 temperature 20.0 14400 < th dose independent rect. 21 1
151 138.13 atmosphere 995.0 43200 < th dose independent rect. 14 1
154 138.15 humidity 80.0 43200 < th dose independent rect. 21 11
156 138.15 radiation 10.0 43200 < th dose dependent rect. 9 1
162 138.22 wind 1.0 43200 < th dose independent rect. 1 1
184 138.37 atmosphere 995.0 43200 > th dose independent rect. 14 1
191 138.43 precipitation 0.1 14400 > th dose independent rect. 13 14
192 138.45 temperature 20.0 14400 > th dose independent rect. 21 1
193 138.45 radiation 20.0 43200 < th dose independent rect. 8 1
195 138.45 precipitation 0.1 14400 < th dose independent rect. 13 14
196 138.45 precipitation 0.1 14400 < th dose dependent rect. 13 14
198 138.47 wind 3.0 43200 > th dose independent rect. 6 4
220 138.58 wind 3.0 43200 > th dose independent rect. 6 1
223 138.59 temperature 20.0 14400 < th dose independent rect. 18 4
225 138.60 humidity 90.0 14400 > th dose independent rect. 21 2
232 138.65 wind 3.0 43200 < th dose independent rect. 6 1
243 138.67 humidity 70.0 14400 > th dose dependent rect. 14 1
250 138.69 temperature 20.0 14400 < th dose independent rect. 14 8
257 138.71 humidity 90.0 14400 > th dose independent rect. 17 7
273 138.75 humidity 90.0 43200 > th dose dependent rect. 14 1
296 138.81 temperature 25.0 14400 < th dose dependent rect. 14 1
304 138.82 wind 1.0 43200 > th dose dependent rect. 6 1
306 138.83 humidity 80.0 43200 < th dose dependent rect. 23 1
309 138.84 temperature 20.0 14400 > th dose independent rect. 18 4
323 138.89 humidity 90.0 14400 > th dose independent rect. 19 5
339 138.95 temperature 20.0 14400 > th dose independent rect. 13 10
385 139.06 humidity 80.0 43200 < th dose dependent rect. 22 5
399 139.08 humidity 90.0 14400 > th dose dependent rect. 22 1
423 139.12 temperature 20.0 4320 > th dose dependent rect. 23 2
484 139.21 humidity 80.0 43200 > th dose dependent rect. 16 6
493 139.24 temperature 20.0 14400 > th dose independent rect. 18 1
505 139.25 precipitation 0.1 4320 < th dose independent rect. 21 21
509 139.25 precipitation 0.1 4320 < th dose dependent rect. 21 21
513 139.26 precipitation 0.1 4320 > th dose independent rect. 21 21
536 139.29 humidity 80.0 43200 > th dose dependent rect. 14 9
567 139.36 precipitation 0.1 14400 > th dose dependent sin 13 NA
599 139.43 wind 1.0 43200 > th dose independent rect. 1 1
603 139.43 humidity 90.0 14400 > th dose dependent rect. 21 3
708 139.61 humidity 90.0 14400 > th dose independent sin 17 NA
748 139.66 radiation 40.0 43200 > th dose dependent rect. 11 1
819 139.73 humidity 80.0 43200 < th dose dependent rect. 2 1
838 139.77 wind 9.0 43200 < th dose dependent rect. 6 1
864 139.80 temperature 25.0 4320 < th dose independent rect. 21 14
889 139.82 precipitation 0.1 14400 > th dose dependent rect. 17 11
901 139.85 precipitation 0.1 43200 < th dose independent rect. 17 1
903 139.85 precipitation 0.1 43200 < th dose dependent rect. 17 1
937 139.91 wind 3.0 43200 > th dose independent rect. 6 8
948 139.94 radiation 30.0 43200 < th dose independent rect. 11 1
968 139.97 radiation 1.0 43200 < th dose dependent rect. 1 1