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Os05g0105800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.9 (0.0308) R2 : 0.873
β1 : -2.34 (0.113) R2dD : 0.125 R2D : 0.0879
β2 : 3.43 (0.09) R2dC : 0.513 R2C : 0.665
β3 : 1.05 (0.0766) R2dE : 0.066 R2E : 0.228
β4 : 3.72 (0.386) R2dD*C : 0.0286 R2D*C : 0.0203
β5 : -2.21 (0.292) R2dD*E : 0.0177 R2D*E : -0.00411
γ1 : -0.265 (0.0656) R2dN8 : 0.0061 R2N8 : -0.00751
σ : 0.579
deviance : 152.02
__
_____
C
peak time of C : 6.1
E
wheather : radiation
threshold : 9.71
memory length : 287
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
152.02 0.579 12.9 -2.34 3.43 1.05 3.72 -2.21 -0.265 6.1 9.71 287 -- --
167.12 0.602 12.9 -2.28 3.21 1.33 3.11 -- -0.216 6.37 9.631 336 -- --
181.19 0.632 12.9 -2.39 4.08 0.209 -- -2.13 -0.362 5.48 9.824 232 -- --
185.23 0.634 12.9 -2.01 3.44 1.17 -- -- -0.138 5.38 23.23 465 -- --
241.72 0.724 13 -1.81 -- 4.22 -- 0.785 -0.64 -- 1.521 653 -- --
199.89 0.663 12.9 -2.2 4.08 -- 2.16 -- -0.293 5.36 -- -- -- --
210.97 0.68 12.9 -2.2 4.09 -- -- -- -0.304 5.27 -- -- -- --
210.92 0.676 12.9 -1.94 -- 4.61 -- -- -0.0681 -- 1.88 651 -- --
291.81 0.796 12.8 -- 3.16 1.8 -- -- 0.157 5.58 21.42 455 -- --
1085 1.54 13 -2.06 -- -- -- -- -0.202 -- -- -- -- --
338.48 0.861 12.9 -- 4.05 -- -- -- -0.0591 5.29 -- -- -- --
313.99 0.825 12.9 -- -- 4.67 -- -- 0.165 -- 1.86 654 -- --
1196.71 1.61 12.9 -- -- -- -- -- 0.0265 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 146.44 radiation 30.0 270 < th dose independent sin 13 NA
2 147.95 radiation 40.0 270 < th dose dependent sin 18 NA
10 148.88 radiation 1.0 270 > th dose dependent rect. 11 22
12 149.01 radiation 20.0 270 < th dose independent sin 17 NA
14 149.14 radiation 40.0 720 < th dose independent rect. 8 14
21 149.46 radiation 40.0 90 < th dose dependent sin 13 NA
22 149.59 radiation 40.0 720 < th dose independent rect. 10 19
28 150.15 radiation 20.0 270 < th dose dependent rect. 6 23
31 150.22 radiation 20.0 90 < th dose dependent rect. 17 21
34 150.36 radiation 10.0 270 < th dose independent sin 20 NA
39 150.59 radiation 10.0 270 < th dose independent rect. 6 23
42 150.66 radiation 40.0 720 < th dose independent rect. 17 19
47 150.90 radiation 40.0 720 < th dose independent rect. 24 14
53 151.10 radiation 40.0 720 < th dose independent rect. 10 10
54 151.11 radiation 40.0 720 < th dose independent rect. 1 12
65 151.48 radiation 40.0 270 < th dose dependent rect. 10 12
67 151.56 radiation 20.0 270 < th dose dependent rect. 15 23
79 151.94 radiation 10.0 270 < th dose independent rect. 15 23
112 152.70 radiation 40.0 720 < th dose dependent rect. 17 16
113 152.73 radiation 10.0 270 < th dose independent rect. 13 23
120 152.90 radiation 10.0 270 < th dose independent no NA NA
125 153.01 radiation 10.0 270 < th dose independent rect. 11 23
136 153.13 radiation 20.0 270 < th dose dependent no NA NA
139 153.16 radiation 20.0 270 < th dose independent rect. 10 12
144 153.22 radiation 10.0 270 > th dose independent rect. 11 22
150 153.26 radiation 20.0 270 < th dose dependent rect. 10 23
153 153.30 radiation 10.0 270 < th dose independent rect. 23 23
202 153.90 radiation 40.0 720 < th dose dependent rect. 8 14
298 154.93 radiation 30.0 10 < th dose dependent rect. 19 20
302 154.96 radiation 40.0 720 < th dose dependent rect. 1 9
304 154.98 radiation 20.0 720 < th dose dependent rect. 1 9
312 155.08 radiation 20.0 270 < th dose dependent rect. 23 23
345 155.39 humidity 60.0 720 > th dose independent rect. 17 12
379 155.65 humidity 50.0 720 > th dose independent rect. 10 10
380 155.66 humidity 50.0 720 > th dose independent rect. 8 14
381 155.68 radiation 10.0 720 < th dose independent rect. 17 14
383 155.68 radiation 10.0 90 < th dose dependent rect. 8 15
384 155.69 radiation 10.0 720 < th dose independent rect. 1 9
414 155.91 wind 1.0 270 > th dose independent rect. 3 10
420 155.94 humidity 50.0 720 > th dose independent rect. 17 20
454 156.18 humidity 50.0 720 > th dose independent rect. 8 21
458 156.19 humidity 50.0 720 > th dose independent rect. 10 19
484 156.29 radiation 40.0 720 < th dose independent rect. 13 16
499 156.37 radiation 10.0 270 < th dose independent rect. 21 23
537 156.54 radiation 10.0 10 < th dose independent rect. 17 22
583 156.81 radiation 40.0 720 < th dose dependent rect. 9 19
614 156.95 humidity 50.0 270 > th dose independent rect. 7 6
637 157.11 radiation 10.0 10 < th dose independent rect. 19 20
667 157.29 radiation 1.0 30 > th dose independent rect. 7 23
705 157.41 radiation 40.0 720 < th dose independent sin 8 NA
706 157.41 humidity 70.0 720 > th dose independent rect. 1 11
718 157.51 radiation 1.0 90 > th dose independent sin 19 NA
729 157.57 temperature 15.0 270 > th dose independent rect. 13 18
736 157.59 atmosphere 1015.0 270 < th dose dependent rect. 17 5
775 157.78 humidity 70.0 30 > th dose independent sin 15 NA
788 157.84 radiation 1.0 270 > th dose dependent sin 20 NA
840 158.07 humidity 70.0 720 > th dose independent rect. 24 13
892 158.33 humidity 60.0 720 > th dose independent rect. 17 3
912 158.42 precipitation 0.1 270 < th dose independent rect. 13 18
913 158.42 precipitation 0.1 270 < th dose dependent rect. 13 18
914 158.42 radiation 20.0 270 < th dose dependent rect. 21 23
984 158.68 radiation 10.0 720 < th dose dependent rect. 17 12