Os05g0105300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : CAP-Gly domain containing protein.
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Os05g0105300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : CAP-Gly domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.13 | 0.262 | 9.73 | 0.306 | 1.2 | -0.25 | -0.801 | -2.05 | 0.126 | 20.6 | 9.014 | 4543 | -- | -- |
| 32.65 | 0.266 | 9.66 | 0.784 | 1.22 | -0.323 | -0.761 | -- | 0.226 | 20.5 | 27.81 | 2071 | -- | -- |
| 32.81 | 0.267 | 9.73 | 0.309 | 1.21 | -0.238 | -- | -2.14 | 0.124 | 20.6 | 9.647 | 3620 | -- | -- |
| 34.28 | 0.273 | 9.67 | 0.807 | 1.23 | -0.328 | -- | -- | 0.203 | 20.6 | 28.16 | 2120 | -- | -- |
| 113.57 | 0.496 | 9.69 | 0.303 | -- | -0.157 | -- | -1.93 | 0.11 | -- | 8.929 | 3053 | -- | -- |
| 35.4 | 0.279 | 9.66 | 0.696 | 1.19 | -- | -0.787 | -- | 0.221 | 20.5 | -- | -- | -- | -- |
| 37.38 | 0.286 | 9.66 | 0.72 | 1.19 | -- | -- | -- | 0.221 | 20.6 | -- | -- | -- | -- |
| 106.39 | 0.48 | 9.62 | 0.669 | -- | 0.548 | -- | -- | 0.208 | -- | 24.5 | 607 | -- | -- |
| 50.18 | 0.33 | 9.69 | -- | 1.2 | -0.174 | -- | -- | 0.0891 | 20.7 | 29.8 | 4001 | -- | -- |
| 117.5 | 0.507 | 9.63 | 0.716 | -- | -- | -- | -- | 0.21 | -- | -- | -- | -- | -- |
| 51.04 | 0.334 | 9.68 | -- | 1.19 | -- | -- | -- | 0.141 | 20.6 | -- | -- | -- | -- |
| 114.56 | 0.499 | 9.66 | -- | -- | 0.747 | -- | -- | 0.0689 | -- | 24.1 | 629 | -- | -- |
| 131.03 | 0.534 | 9.65 | -- | -- | -- | -- | -- | 0.131 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.61 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 4 |
| 3 | 29.62 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 4 |
| 10 | 29.67 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 13 | 29.68 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 41 | 29.88 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 46 | 29.90 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 71 | 30.02 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 14 |
| 76 | 30.03 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 13 | 11 |
| 77 | 30.04 | wind | 7 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 93 | 30.09 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 2 | 14 |
| 94 | 30.09 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 102 | 30.10 | atmosphere | 1000 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 105 | 30.11 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 1 | 15 |
| 124 | 30.14 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 5 | 10 |
| 132 | 30.15 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 13 | 3 |
| 141 | 30.17 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 5 | 10 |
| 146 | 30.18 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 11 | 4 |
| 184 | 30.23 | atmosphere | 995 | 43200 | > th | dose independent | sin | 3 | NA |
| 189 | 30.23 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 18 | 22 |
| 236 | 30.31 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 11 | 4 |
| 242 | 30.32 | atmosphere | 995 | 43200 | < th | dose independent | sin | 2 | NA |
| 342 | 30.43 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 10 | 12 |
| 345 | 30.43 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 7 | 19 |
| 346 | 30.43 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 4 | 20 |
| 401 | 30.46 | atmosphere | 995 | 43200 | > th | dose independent | sin | 21 | NA |
| 412 | 30.46 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 10 | 12 |
| 417 | 30.46 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 8 | 16 |
| 444 | 30.47 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 7 | 17 |
| 445 | 30.47 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 5 | 18 |
| 457 | 30.48 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 5 |
| 482 | 30.48 | wind | 5 | 43200 | > th | dose independent | rect. | 17 | 21 |
| 496 | 30.49 | atmosphere | 995 | 43200 | < th | dose independent | sin | 20 | NA |
| 510 | 30.49 | wind | 5 | 43200 | > th | dose independent | rect. | 17 | 19 |
| 534 | 30.50 | wind | 5 | 43200 | > th | dose independent | rect. | 17 | 17 |
| 549 | 30.51 | atmosphere | 995 | 43200 | < th | dose independent | no | NA | NA |
| 658 | 30.56 | wind | 5 | 43200 | < th | dose independent | rect. | 17 | 19 |
| 663 | 30.56 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 20 | NA |
| 675 | 30.57 | wind | 5 | 43200 | < th | dose independent | rect. | 17 | 21 |
| 712 | 30.59 | wind | 5 | 43200 | < th | dose independent | rect. | 17 | 17 |
| 718 | 30.60 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 770 | 30.64 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 816 | 30.69 | atmosphere | 995 | 43200 | > th | dose independent | no | NA | NA |
| 828 | 30.70 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 893 | 30.77 | wind | 1 | 4320 | < th | dose independent | rect. | 4 | 1 |
| 917 | 30.79 | wind | 9 | 43200 | > th | dose dependent | sin | 12 | NA |
| 918 | 30.79 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 8 |
| 937 | 30.81 | temperature | 30 | 4320 | < th | dose dependent | rect. | 18 | 7 |
| 945 | 30.82 | wind | 5 | 43200 | > th | dose independent | sin | 12 | NA |
| 955 | 30.82 | temperature | 10 | 4320 | > th | dose dependent | rect. | 18 | 7 |
| 963 | 30.83 | wind | 9 | 43200 | > th | dose independent | sin | 11 | NA |