Os05g0104700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine rich repeat, N-terminal domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os05g0104700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Leucine rich repeat, N-terminal domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 207.84 | 0.677 | 4.46 | 0.273 | 4.61 | -5.54 | -2.51 | 5.44 | -0.0388 | 18.9 | 0.8422 | 829 | -- | -- |
| 211.76 | 0.678 | 4.56 | 0.0765 | 5.41 | -6.61 | 1.03 | -- | -0.0865 | 19 | 0.55 | 855 | -- | -- |
| 209.48 | 0.674 | 4.47 | 0.252 | 5.1 | -6.22 | -- | 2.34 | 0.0179 | 18.9 | 0.8177 | 826 | -- | -- |
| 213.09 | 0.68 | 4.5 | 0.254 | 5.33 | -6.55 | -- | -- | -0.0179 | 19.1 | 0.59 | 855 | -- | -- |
| 263.13 | 0.755 | 4.45 | 0.371 | -- | -2.86 | -- | -1.16 | -0.0999 | -- | 0.6882 | 1442 | -- | -- |
| 287.06 | 0.794 | 4.45 | -0.36 | 0.751 | -- | -0.402 | -- | -0.331 | 21.2 | -- | -- | -- | -- |
| 287.53 | 0.794 | 4.45 | -0.344 | 0.758 | -- | -- | -- | -0.329 | 21 | -- | -- | -- | -- |
| 250.11 | 0.737 | 4.37 | 0.125 | -- | -2.5 | -- | -- | 0.0391 | -- | 0.72 | 1482 | -- | -- |
| 214.66 | 0.682 | 4.5 | -- | 5.24 | -6.43 | -- | -- | -0.0438 | 19.1 | 0.6 | 854 | -- | -- |
| 320.53 | 0.837 | 4.43 | -0.343 | -- | -- | -- | -- | -0.334 | -- | -- | -- | -- | -- |
| 290.65 | 0.797 | 4.44 | -- | 0.759 | -- | -- | -- | -0.291 | 20.9 | -- | -- | -- | -- |
| 250.2 | 0.737 | 4.36 | -- | -- | -2.49 | -- | -- | -0.0192 | -- | 0.6745 | 1493 | -- | -- |
| 323.63 | 0.84 | 4.42 | -- | -- | -- | -- | -- | -0.296 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 199.91 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 12 |
| 2 | 200.01 | radiation | 1 | 720 | < th | dose dependent | rect. | 11 | 14 |
| 10 | 202.38 | radiation | 1 | 720 | < th | dose dependent | sin | 16 | NA |
| 33 | 204.93 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 12 |
| 38 | 205.22 | radiation | 1 | 720 | < th | dose independent | rect. | 11 | 14 |
| 46 | 205.86 | temperature | 25 | 720 | < th | dose independent | rect. | 14 | 8 |
| 47 | 205.93 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 6 |
| 49 | 206.08 | temperature | 25 | 720 | < th | dose independent | rect. | 10 | 13 |
| 57 | 206.52 | radiation | 1 | 720 | < th | dose independent | sin | 15 | NA |
| 65 | 206.84 | temperature | 25 | 720 | > th | dose independent | rect. | 14 | 8 |
| 74 | 207.26 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 10 |
| 87 | 207.42 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 3 |
| 108 | 208.48 | temperature | 25 | 720 | < th | dose independent | sin | 19 | NA |
| 115 | 208.83 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 7 |
| 142 | 209.82 | temperature | 25 | 720 | > th | dose independent | rect. | 11 | 12 |
| 168 | 210.58 | radiation | 1 | 720 | > th | dose independent | sin | 18 | NA |
| 204 | 211.92 | radiation | 1 | 720 | > th | dose independent | rect. | 16 | 14 |
| 208 | 212.22 | temperature | 25 | 720 | > th | dose independent | sin | 19 | NA |
| 214 | 212.37 | temperature | 25 | 720 | > th | dose dependent | sin | 14 | NA |
| 247 | 213.33 | radiation | 1 | 720 | > th | dose independent | rect. | 16 | 3 |
| 350 | 215.96 | radiation | 1 | 720 | < th | dose dependent | rect. | 11 | 19 |
| 356 | 216.22 | radiation | 1 | 720 | < th | dose independent | rect. | 15 | 3 |
| 374 | 216.75 | radiation | 1 | 720 | < th | dose independent | rect. | 11 | 19 |
| 408 | 217.65 | radiation | 1 | 720 | < th | dose dependent | rect. | 11 | 8 |
| 423 | 218.00 | temperature | 30 | 720 | < th | dose dependent | rect. | 13 | 9 |
| 474 | 218.63 | radiation | 1 | 720 | < th | dose independent | rect. | 11 | 7 |
| 485 | 218.91 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 12 |
| 496 | 219.20 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 3 |
| 541 | 220.17 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 15 |
| 552 | 220.36 | wind | 7 | 14400 | > th | dose independent | rect. | 11 | 3 |
| 561 | 220.43 | wind | 7 | 14400 | < th | dose independent | rect. | 11 | 3 |
| 598 | 220.57 | radiation | 1 | 720 | > th | dose independent | rect. | 16 | 22 |
| 633 | 220.86 | wind | 5 | 14400 | > th | dose dependent | rect. | 11 | 2 |
| 670 | 221.30 | temperature | 25 | 720 | < th | dose independent | rect. | 19 | 1 |
| 776 | 221.82 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 851 | 222.30 | wind | 7 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 955 | 222.73 | wind | 7 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 959 | 222.75 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 15 |
| 990 | 223.01 | radiation | 1 | 1440 | < th | dose independent | rect. | 16 | 5 |