Os05g0104600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine rich repeat, N-terminal domain containing protein.
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Os05g0104600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine rich repeat, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 158.15 | 0.591 | 5.68 | 1.55 | 0.232 | 2.85 | -0.8 | 2.27 | -0.0491 | 18.3 | 25.16 | 6072 | 1.02 | 0.468 |
| 160.17 | 0.589 | 5.61 | 1.99 | 0.317 | 2.92 | -0.669 | -- | 0.00523 | 18.5 | 25.52 | 4717 | 1.18 | 0.959 |
| 157.99 | 0.585 | 5.69 | 1.58 | 0.243 | 2.81 | -- | 2.37 | -0.0275 | 17.9 | 24.23 | 6213 | 1.17 | 0.283 |
| 161.83 | 0.592 | 5.61 | 2 | 0.304 | 2.89 | -- | -- | 0.0188 | 17.6 | 25.3 | 4716 | 1.15 | 1.13 |
| 161.02 | 0.591 | 5.68 | 1.55 | -- | 2.81 | -- | 2.46 | -0.0386 | -- | 24.09 | 6240 | 1.18 | 0.294 |
| 305.91 | 0.82 | 5.77 | 0.701 | 0.201 | -- | -0.903 | -- | -0.691 | 18.6 | -- | -- | -- | -- |
| 307.53 | 0.821 | 5.77 | 0.718 | 0.217 | -- | -- | -- | -0.692 | 17.1 | -- | -- | -- | -- |
| 166.2 | 0.6 | 5.61 | 2 | -- | 2.86 | -- | -- | -0.00137 | -- | 25 | 4689 | 1.25 | 1.25 |
| 243.7 | 0.727 | 5.7 | -- | 0.147 | 2.08 | -- | -- | -0.234 | 16.7 | 25.6 | 4611 | 1.15 | 0.0672 |
| 310 | 0.823 | 5.77 | 0.71 | -- | -- | -- | -- | -0.698 | -- | -- | -- | -- | -- |
| 321.12 | 0.838 | 5.79 | -- | 0.205 | -- | -- | -- | -0.772 | 17.3 | -- | -- | -- | -- |
| 243.66 | 0.727 | 5.73 | -- | -- | 1.95 | -- | -- | -0.399 | -- | 25.6 | 4634 | 1.19 | 0.0165 |
| 323.31 | 0.839 | 5.79 | -- | -- | -- | -- | -- | -0.776 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 164.26 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 8 | 165.25 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 23 | 165.83 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 21 | 7 |
| 36 | 166.20 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 3 | 4 |
| 58 | 166.53 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 21 | 8 |
| 261 | 169.04 | temperature | 25.0 | 4320 | < th | dose dependent | sin | 12 | NA |
| 368 | 170.39 | temperature | 10.0 | 4320 | > th | dose dependent | sin | 11 | NA |
| 866 | 175.31 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 873 | 175.38 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 874 | 175.38 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 1 |