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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0104300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Leucine rich repeat, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.94 (0.0371) R2 : 0.174
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.17 (0.156) R2dE : 0.118 R2E : 0.146
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.264 (0.0822) R2dN8 : 0.0279 R2N8 : 0.0562
σ : 0.687
deviance : 216.43
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 27.22
memory length : 178
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
202.82 0.669 3.96 0.282 0.345 1.44 -0.29 1.21 -0.214 20.8 26.5 185 -- --
204.84 0.667 3.93 0.497 0.359 1.4 -0.212 -- -0.163 20.4 27.24 181 -- --
203.07 0.664 3.95 0.304 0.351 1.46 -- 1.18 -0.206 20.5 26.59 187 -- --
204.98 0.667 3.93 0.505 0.366 1.41 -- -- -0.162 20.3 27.29 184 -- --
209.05 0.673 3.95 0.291 -- 1.45 -- 1.21 -0.218 -- 26.26 135 -- --
232.84 0.715 4 0.136 0.426 -- -0.167 -- -0.47 24 -- -- -- --
232.96 0.715 4 0.142 0.427 -- -- -- -0.47 0.00702 -- -- -- --
211.11 0.677 3.92 0.479 -- 1.37 -- -- -0.172 -- 26.73 117 -- --
210.98 0.676 3.95 -- 0.34 1.2 -- -- -0.248 20.9 27.22 178 -- --
244.42 0.731 3.99 0.156 -- -- -- -- -0.464 -- -- -- -- --
233.5 0.715 4 -- 0.429 -- -- -- -0.485 0.0259 -- -- -- --
216.43 0.687 3.94 -- -- 1.17 -- -- -0.264 -- 27.22 178 -- --
245.06 0.731 3.99 -- -- -- -- -- -0.481 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 195.03 temperature 20 270 > th dose dependent rect. 19 15
9 197.75 temperature 20 270 > th dose dependent sin 9 NA
11 197.95 temperature 25 90 < th dose dependent rect. 24 23
17 198.63 temperature 10 270 > th dose dependent sin 9 NA
19 198.75 temperature 25 270 < th dose dependent rect. 23 21
21 198.87 temperature 30 270 < th dose dependent sin 9 NA
43 200.10 temperature 15 270 > th dose dependent rect. 17 22
46 200.13 temperature 20 270 > th dose dependent rect. 18 19
73 201.02 temperature 30 270 < th dose dependent rect. 23 11
78 201.12 temperature 25 1440 < th dose independent rect. 13 8
79 201.13 radiation 1 1440 < th dose dependent rect. 14 4
82 201.15 radiation 1 1440 < th dose dependent rect. 8 13
88 201.19 radiation 1 1440 < th dose independent rect. 14 4
96 201.22 radiation 1 1440 < th dose dependent rect. 8 22
99 201.26 radiation 1 1440 < th dose dependent rect. 13 8
105 201.28 temperature 25 1440 < th dose independent rect. 15 4
111 201.31 wind 9 14400 > th dose independent rect. 15 2
113 201.32 temperature 25 1440 < th dose independent rect. 14 6
143 201.43 radiation 1 1440 < th dose dependent rect. 13 14
159 201.48 temperature 25 1440 > th dose independent rect. 14 5
163 201.48 radiation 1 1440 < th dose dependent rect. 12 18
165 201.49 radiation 1 1440 < th dose dependent sin 17 NA
175 201.52 temperature 25 1440 > th dose independent rect. 13 7
195 201.64 radiation 1 1440 > th dose independent rect. 14 4
208 201.75 radiation 1 1440 < th dose independent rect. 10 8
209 201.75 temperature 25 1440 < th dose independent rect. 7 14
210 201.76 temperature 25 1440 > th dose independent rect. 11 10
231 201.86 temperature 25 1440 > th dose independent rect. 7 12
249 202.02 temperature 25 10 < th dose dependent rect. 24 22
252 202.10 radiation 1 1440 > th dose independent rect. 10 8
257 202.13 radiation 1 1440 < th dose independent rect. 9 21
264 202.17 wind 9 14400 < th dose independent rect. 15 2
268 202.18 radiation 1 1440 < th dose independent rect. 12 18
287 202.39 radiation 1 4320 < th dose dependent rect. 17 1
288 202.40 radiation 1 1440 < th dose independent rect. 13 9
291 202.41 temperature 25 1440 < th dose independent sin 21 NA
298 202.45 temperature 25 1440 > th dose independent sin 22 NA
307 202.49 radiation 1 1440 < th dose independent rect. 9 13
309 202.50 radiation 1 1440 < th dose independent rect. 10 11
332 202.54 radiation 1 1440 < th dose independent rect. 13 14
376 202.63 radiation 1 1440 < th dose independent rect. 10 17
378 202.63 radiation 1 1440 > th dose independent rect. 10 20
386 202.65 radiation 1 1440 < th dose independent sin 17 NA
415 202.74 radiation 1 1440 > th dose independent rect. 12 18
448 202.89 temperature 25 1440 < th dose independent rect. 2 19
460 202.96 temperature 25 4320 < th dose dependent rect. 1 2
509 203.02 temperature 25 1440 < th dose dependent rect. 13 9
543 203.14 temperature 10 4320 > th dose dependent rect. 1 2
544 203.15 radiation 1 1440 > th dose independent sin 17 NA
563 203.17 temperature 25 4320 < th dose dependent rect. 21 6
674 203.57 temperature 25 4320 < th dose dependent rect. 21 1
686 203.60 temperature 25 270 < th dose dependent rect. 7 23
751 203.77 temperature 10 270 > th dose dependent rect. 5 22
822 203.93 temperature 25 720 < th dose dependent rect. 6 20
863 204.04 radiation 1 1440 < th dose independent rect. 17 1
876 204.06 temperature 25 1440 < th dose independent rect. 7 20
941 204.22 temperature 25 1440 < th dose dependent sin 18 NA
948 204.22 temperature 25 270 < th dose dependent rect. 12 23
983 204.30 temperature 25 4320 < th dose dependent sin 13 NA