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Os05g0102600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, FYVE/PHD-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.68 (0.0194) R2 : 0.595
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.09 (0.0507) R2dC : 0.412 R2C : 0.366
β3 : 1.47 (0.0933) R2dE : 0.236 R2E : 0.185
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0383 (0.042) R2dN8 : 0.00102 R2N8 : -0.00882
σ : 0.362
deviance : 60.39
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C
peak time of C : 17.9
E
wheather : temperature
threshold : 23.44
memory length : 49
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
57.49 0.356 7.69 -0.328 1.07 1.3 0.054 -0.155 -0.0138 18 23.43 42 -- --
57.51 0.353 7.7 -0.344 1.07 1.34 0.0612 -- -0.0195 18 23.33 43 -- --
57.49 0.353 7.69 -0.328 1.07 1.31 -- -0.155 -0.0145 18 23.4 43 -- --
57.52 0.353 7.7 -0.346 1.07 1.34 -- -- -0.0203 18 23.3 37 -- --
115.89 0.504 7.68 -0.382 -- 1.15 -- -0.308 -0.0601 -- 23.23 13 -- --
79.96 0.419 7.74 -0.631 1.04 -- 0.0376 -- -0.205 18.7 -- -- -- --
79.97 0.419 7.74 -0.632 1.04 -- -- -- -0.205 18.7 -- -- -- --
116.02 0.504 7.68 -0.416 -- 1.19 -- -- -0.0672 -- 23.2 12 -- --
60.39 0.362 7.68 -- 1.09 1.47 -- -- 0.0383 17.9 23.44 49 -- --
136.03 0.545 7.72 -0.656 -- -- -- -- -0.226 -- -- -- -- --
90.48 0.445 7.72 -- 1.04 -- -- -- -0.135 18.6 -- -- -- --
120.13 0.512 7.67 -- -- 1.34 -- -- -0.00455 -- 23.2 7 -- --
147.38 0.567 7.7 -- -- -- -- -- -0.153 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 58.26 temperature 25 270 < th dose dependent rect. 9 22
2 58.43 temperature 25 270 < th dose dependent rect. 11 22
3 58.46 temperature 25 90 < th dose dependent rect. 5 22
4 58.47 temperature 25 90 < th dose dependent rect. 16 19
5 58.49 temperature 25 270 < th dose dependent rect. 13 21
8 58.52 temperature 25 90 < th dose dependent sin 13 NA
11 58.55 temperature 25 10 < th dose dependent rect. 5 21
27 58.74 temperature 20 30 > th dose independent rect. 9 23
36 58.86 temperature 25 90 < th dose dependent rect. 16 22
50 58.93 temperature 25 10 < th dose dependent rect. 17 21
71 59.09 temperature 25 90 < th dose dependent rect. 21 23
78 59.14 temperature 25 10 < th dose dependent rect. 17 19
93 59.27 temperature 25 270 < th dose dependent rect. 1 23
112 59.41 temperature 25 270 < th dose dependent rect. 19 23
114 59.43 temperature 25 10 < th dose dependent rect. 13 23
117 59.45 temperature 25 90 < th dose dependent no NA NA
141 59.57 temperature 25 90 < th dose dependent rect. 19 16
146 59.58 temperature 25 10 < th dose dependent rect. 23 23
153 59.61 temperature 25 270 < th dose dependent rect. 10 17
207 59.91 temperature 25 270 < th dose dependent rect. 10 15
214 59.97 temperature 20 30 < th dose independent rect. 4 22
216 59.97 temperature 25 90 < th dose dependent rect. 21 14
276 60.28 humidity 50 14400 > th dose dependent rect. 24 1
284 60.32 temperature 20 30 < th dose independent rect. 17 21
295 60.35 temperature 20 30 < th dose independent rect. 22 21
302 60.38 humidity 50 14400 > th dose dependent rect. 24 3
306 60.39 temperature 25 10 < th dose dependent rect. 8 18
326 60.48 temperature 20 30 < th dose independent rect. 9 21
336 60.51 temperature 25 90 < th dose dependent rect. 16 11
342 60.52 temperature 25 720 < th dose dependent rect. 19 5
375 60.60 temperature 25 270 < th dose dependent rect. 14 13
378 60.61 temperature 25 90 < th dose dependent rect. 21 17
385 60.63 temperature 25 90 < th dose dependent rect. 16 9
396 60.66 temperature 20 90 > th dose dependent rect. 20 10
402 60.68 temperature 20 90 > th dose independent rect. 9 21
408 60.69 temperature 20 270 > th dose independent rect. 7 22
434 60.74 temperature 25 10 < th dose dependent rect. 17 9
442 60.76 temperature 20 270 > th dose independent rect. 9 19
480 60.85 temperature 20 30 < th dose independent rect. 20 23
481 60.85 humidity 80 14400 > th dose dependent rect. 24 7
510 60.90 temperature 20 30 < th dose independent rect. 13 23
515 60.91 temperature 20 30 < th dose independent rect. 17 19
517 60.91 temperature 20 30 > th dose independent rect. 7 23
528 60.93 temperature 20 30 > th dose independent no NA NA
529 60.93 temperature 20 30 < th dose independent no NA NA
533 60.93 temperature 25 10 < th dose dependent rect. 22 16
539 60.95 temperature 20 30 < th dose independent rect. 11 23
571 61.00 temperature 25 10 < th dose dependent rect. 22 14
574 61.01 temperature 25 270 < th dose dependent rect. 19 8
577 61.01 temperature 25 10 < th dose dependent rect. 12 14
591 61.04 temperature 20 90 > th dose independent rect. 19 23
633 61.14 temperature 25 270 < th dose dependent rect. 21 3
684 61.23 temperature 25 90 < th dose dependent rect. 21 10
691 61.24 temperature 20 90 < th dose independent rect. 8 17
697 61.24 temperature 20 30 < th dose independent rect. 1 23
819 61.45 temperature 25 90 < th dose dependent rect. 23 2
825 61.47 temperature 20 90 > th dose independent rect. 13 16
854 61.54 temperature 20 30 < th dose independent rect. 22 16