Os05g0102500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0102500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.95 | 0.261 | 10.3 | -0.0666 | 0.442 | 0.422 | -0.203 | 0.3 | -0.0457 | 5.31 | 21.4 | 1036 | -- | -- |
| 31.2 | 0.26 | 10.3 | -0.142 | 0.424 | 0.405 | -0.155 | -- | -0.0611 | 5.21 | 21.45 | 1118 | -- | -- |
| 31.05 | 0.26 | 10.3 | -0.0691 | 0.435 | 0.428 | -- | 0.305 | -0.0454 | 5.23 | 21.44 | 1080 | -- | -- |
| 31.28 | 0.26 | 10.3 | -0.148 | 0.435 | 0.406 | -- | -- | -0.0639 | 5.2 | 21.4 | 1118 | -- | -- |
| 40.74 | 0.297 | 10.3 | -0.0567 | -- | 0.459 | -- | 0.321 | -0.0416 | -- | 21.4 | 1240 | -- | -- |
| 36.51 | 0.283 | 10.2 | 0.0114 | 0.45 | -- | -0.2 | -- | 0.0521 | 4.83 | -- | -- | -- | -- |
| 36.61 | 0.283 | 10.2 | 0.012 | 0.448 | -- | -- | -- | 0.0531 | 4.77 | -- | -- | -- | -- |
| 40.97 | 0.298 | 10.3 | -0.147 | -- | 0.452 | -- | -- | -0.0648 | -- | 21.33 | 1210 | -- | -- |
| 31.77 | 0.263 | 10.3 | -- | 0.445 | 0.361 | -- | -- | -0.0355 | 5.27 | 21.47 | 957 | -- | -- |
| 47.23 | 0.321 | 10.2 | 0.0289 | -- | -- | -- | -- | 0.0648 | -- | -- | -- | -- | -- |
| 36.61 | 0.283 | 10.2 | -- | 0.448 | -- | -- | -- | 0.0518 | 4.77 | -- | -- | -- | -- |
| 41.5 | 0.3 | 10.3 | -- | -- | 0.399 | -- | -- | -0.0358 | -- | 21.5 | 1194 | -- | -- |
| 47.25 | 0.321 | 10.2 | -- | -- | -- | -- | -- | 0.0616 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.19 | temperature | 25 | 720 | < th | dose dependent | rect. | 10 | 21 |
| 4 | 31.22 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 20 |
| 9 | 31.23 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 17 |
| 40 | 31.25 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 50 | 31.27 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 60 | 31.27 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 62 | 31.27 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 74 | 31.31 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 78 | 31.33 | temperature | 25 | 720 | < th | dose dependent | sin | 12 | NA |
| 85 | 31.35 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 86 | 31.35 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 3 |
| 116 | 31.38 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 11 |
| 124 | 31.39 | temperature | 25 | 1440 | < th | dose dependent | sin | 15 | NA |
| 185 | 31.44 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 15 |
| 192 | 31.45 | temperature | 10 | 720 | > th | dose dependent | sin | 10 | NA |
| 263 | 31.51 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 267 | 31.51 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 325 | 31.54 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 328 | 31.54 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 6 |
| 329 | 31.54 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 6 |
| 345 | 31.55 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 2 |
| 439 | 31.60 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 450 | 31.60 | temperature | 10 | 720 | > th | dose dependent | rect. | 14 | 19 |
| 572 | 31.66 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 610 | 31.69 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 21 |
| 633 | 31.70 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 23 |
| 767 | 31.76 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 768 | 31.77 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 21 |
| 798 | 31.78 | temperature | 20 | 720 | > th | dose independent | rect. | 6 | 22 |
| 820 | 31.79 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 21 |
| 849 | 31.80 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 23 |
| 904 | 31.82 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 932 | 31.83 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 970 | 31.86 | temperature | 20 | 720 | > th | dose independent | sin | 13 | NA |
| 993 | 31.87 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 994 | 31.87 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 12 |
| 997 | 31.87 | temperature | 20 | 720 | < th | dose independent | rect. | 8 | 22 |