Os05g0102200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, CCHC-type domain containing protein.
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Os05g0102200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, CCHC-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 181.46 | 0.633 | 6.91 | 3.88 | 0.653 | -1.99 | -0.0768 | 3.99 | 0.977 | 8.28 | 21.43 | 1757 | -- | -- |
| 193.13 | 0.647 | 7.03 | 2.99 | 0.697 | -2.16 | -0.654 | -- | 0.798 | 6.97 | 13.76 | 2341 | -- | -- |
| 181.48 | 0.627 | 6.91 | 3.89 | 0.645 | -2 | -- | 4.04 | 0.979 | 8.29 | 21.47 | 1769 | -- | -- |
| 192.46 | 0.646 | 7.04 | 2.92 | 0.67 | -2.19 | -- | -- | 0.719 | 7.01 | 12.86 | 2328 | -- | -- |
| 197.52 | 0.655 | 6.91 | 4.08 | -- | -2.22 | -- | 4.61 | 1.04 | -- | 21.89 | 2030 | -- | -- |
| 283.56 | 0.789 | 7.14 | 2.1 | 0.808 | -- | -0.198 | -- | 0.259 | 8.1 | -- | -- | -- | -- |
| 283.68 | 0.789 | 7.13 | 2.1 | 0.808 | -- | -- | -- | 0.259 | 8.12 | -- | -- | -- | -- |
| 211.14 | 0.677 | 7.05 | 2.84 | -- | -1.96 | -- | -- | 0.71 | -- | 20.38 | 2071 | -- | -- |
| 365.22 | 0.89 | 7.16 | -- | 0.457 | -1.21 | -- | -- | 0.202 | 6.89 | 21.9 | 769 | -- | -- |
| 319.57 | 0.835 | 7.16 | 2.11 | -- | -- | -- | -- | 0.269 | -- | -- | -- | -- | -- |
| 399.77 | 0.935 | 7.19 | -- | 0.821 | -- | -- | -- | 0.0252 | 7.94 | -- | -- | -- | -- |
| 370.46 | 0.896 | 7.16 | -- | -- | -1.51 | -- | -- | 0.238 | -- | 22.11 | 627 | -- | -- |
| 436.52 | 0.975 | 7.21 | -- | -- | -- | -- | -- | 0.0351 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 160.31 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 3 | 161.04 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 5 | 162.71 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 10 | 163.48 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 7 |
| 14 | 164.59 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 16 | 164.65 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 23 | 165.79 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 4 |
| 24 | 165.86 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 33 | 167.05 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 42 | 168.17 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 13 |
| 72 | 171.85 | wind | 9 | 43200 | > th | dose dependent | sin | 13 | NA |
| 76 | 172.65 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 80 | 173.04 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 89 | 173.82 | wind | 7 | 43200 | > th | dose dependent | rect. | 13 | 22 |
| 93 | 174.08 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 16 |
| 94 | 174.11 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 101 | 174.46 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 7 | 9 |
| 108 | 174.71 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 8 | 7 |
| 113 | 174.88 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 116 | 174.95 | wind | 7 | 43200 | > th | dose dependent | rect. | 24 | 21 |
| 118 | 175.03 | wind | 7 | 43200 | > th | dose dependent | rect. | 2 | 19 |
| 135 | 175.27 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 16 |
| 146 | 175.49 | wind | 5 | 43200 | < th | dose independent | rect. | 4 | 17 |
| 166 | 175.94 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 20 |
| 173 | 176.03 | wind | 1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 198 | 176.33 | wind | 7 | 43200 | > th | dose dependent | rect. | 17 | 22 |
| 247 | 176.77 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 21 |
| 253 | 176.85 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 264 | 176.94 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 20 |
| 268 | 176.99 | wind | 5 | 43200 | < th | dose independent | rect. | 24 | 21 |
| 321 | 177.31 | wind | 7 | 43200 | > th | dose dependent | rect. | 2 | 23 |
| 332 | 177.38 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 21 |
| 347 | 177.45 | wind | 5 | 43200 | > th | dose independent | sin | 23 | NA |
| 349 | 177.45 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 21 |
| 351 | 177.45 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 371 | 177.53 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 21 |
| 383 | 177.59 | wind | 7 | 43200 | > th | dose dependent | no | NA | NA |
| 402 | 177.69 | wind | 5 | 43200 | < th | dose independent | sin | 23 | NA |
| 422 | 177.82 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 22 |
| 435 | 177.90 | wind | 9 | 43200 | > th | dose independent | sin | 12 | NA |
| 449 | 178.00 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 541 | 178.45 | wind | 7 | 43200 | > th | dose dependent | rect. | 20 | 23 |
| 572 | 178.58 | wind | 5 | 43200 | > th | dose dependent | sin | 23 | NA |
| 641 | 178.80 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 22 |
| 789 | 179.43 | wind | 9 | 43200 | > th | dose dependent | sin | 17 | NA |
| 845 | 179.75 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 6 |
| 868 | 179.85 | wind | 5 | 43200 | < th | dose independent | no | NA | NA |
| 905 | 180.03 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 8 |
| 917 | 180.11 | wind | 5 | 43200 | > th | dose independent | sin | 16 | NA |
| 960 | 180.29 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 13 |
| 964 | 180.32 | wind | 5 | 43200 | > th | dose dependent | sin | 16 | NA |
| 977 | 180.38 | wind | 5 | 43200 | > th | dose independent | no | NA | NA |