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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0102000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : SAM dependent carboxyl methyltransferase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.09 (0.0808) R2 : 0.674
β1 : -4 (0.302) R2dD : 0.138 R2D : 0.0842
β2 : 4.81 (0.208) R2dC : 0.383 R2C : 0.41
β3 : -5.55 (0.414) R2dE : 0.145 R2E : 0.126
β4 : -5.4 (0.937) R2dD*C : 0.0235 R2D*C : 0.0244
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.119 (0.178) R2dN8 : 0.000446 R2N8 : 0.00529
σ : 1.49
deviance : 1027.81
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_____
C
peak time of C : 6.85
E
wheather : radiation
threshold : 0.5988
memory length : 1459
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 5.36
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1022.81 1.5 5.14 -4.48 4.75 -5.26 -5.08 3.68 0.0337 6.56 0.7591 1472 5.74 --
1027.81 1.49 5.09 -4 4.81 -5.55 -5.4 -- 0.119 6.85 0.5988 1459 5.36 --
1085.16 1.53 5.15 -4.71 4.75 -5.29 -- 4.89 0.0189 6.39 0.7714 1477 5.73 --
1100.43 1.55 5.1 -4.12 4.79 -5.9 -- -- 0.131 6.38 0.6794 1473 5.46 --
2166.67 2.17 5.22 -4.19 -- -5.86 -- 2.57 0.128 -- 0.9583 1482 8.25 --
1403.13 1.76 4.92 -2.92 4.99 -- -5.48 -- 0.815 7.33 -- -- -- --
1484.41 1.8 4.91 -3.04 4.98 -- -- -- 0.824 7.3 -- -- -- --
2071.65 2.12 5.18 -4.25 -- -7.81 -- -- 0.232 -- 0.9 1605 13.2 --
1507.65 1.81 5 -- 4.85 -5.14 -- -- 0.577 6.25 0.8423 1492 5.83 --
2800.92 2.47 5.03 -2.96 -- -- -- -- 0.908 -- -- -- -- --
1728.64 1.94 4.84 -- 4.95 -- -- -- 1.16 7.34 -- -- -- --
2209.47 2.2 4.96 -- -- -3.85 -- -- 1.19 -- 6.91 1589 11.8 --
3031.75 2.57 4.95 -- -- -- -- -- 1.24 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 978.53 wind 5 43200 > th dose dependent rect. 15 1
2 979.95 wind 7 43200 < th dose independent rect. 15 1
3 983.33 wind 7 43200 > th dose independent rect. 15 1
4 988.38 wind 5 43200 > th dose dependent rect. 15 6
7 992.53 wind 5 43200 > th dose independent rect. 9 13
8 992.59 wind 5 43200 > th dose independent rect. 11 17
12 992.83 wind 5 43200 > th dose independent rect. 10 15
15 993.09 wind 5 43200 > th dose dependent rect. 14 12
24 993.62 wind 5 43200 < th dose independent rect. 9 13
37 994.38 wind 5 43200 > th dose independent sin 20 NA
39 994.41 wind 5 43200 > th dose dependent rect. 14 9
42 994.53 wind 5 43200 < th dose independent rect. 11 17
81 996.67 wind 5 43200 < th dose independent sin 22 NA
84 996.75 wind 5 43200 > th dose dependent sin 17 NA
90 996.95 wind 5 43200 > th dose independent rect. 9 8
98 997.33 wind 7 43200 < th dose independent rect. 15 6
113 998.00 wind 5 43200 < th dose independent rect. 9 8
129 998.63 wind 3 43200 > th dose dependent rect. 10 13
174 1000.35 wind 5 43200 > th dose independent rect. 15 8
278 1003.09 wind 7 43200 < th dose independent rect. 14 14
281 1003.13 wind 3 43200 > th dose dependent rect. 9 8
304 1003.90 wind 7 43200 < th dose independent rect. 14 16
320 1004.26 wind 3 43200 > th dose dependent rect. 10 6
324 1004.37 wind 9 43200 < th dose dependent rect. 20 1
359 1005.30 wind 1 43200 > th dose dependent rect. 20 1
378 1005.69 wind 5 43200 < th dose independent rect. 15 8
383 1005.81 wind 7 43200 > th dose independent rect. 15 4
404 1006.22 wind 9 43200 < th dose dependent rect. 11 3
432 1006.88 wind 1 43200 > th dose dependent rect. 11 3
619 1011.30 wind 5 43200 > th dose dependent rect. 24 20
711 1012.93 wind 9 43200 < th dose dependent rect. 10 5
890 1016.15 wind 5 43200 < th dose independent no NA NA
971 1017.56 humidity 90 43200 < th dose independent rect. 20 1
972 1017.62 wind 5 43200 > th dose independent no NA NA