Os05g0101400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 50S ribosomal protein L28, chloroplast precursor.
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Os05g0101400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 50S ribosomal protein L28, chloroplast precursor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.07 | 0.301 | 13.7 | -0.14 | 0.884 | 0.336 | 0.137 | -0.939 | -0.498 | 0.0407 | 19.43 | 855 | -- | -- |
| 42.05 | 0.302 | 13.7 | -0.242 | 0.89 | 0.608 | 0.465 | -- | -0.558 | 23.9 | 18.6 | 694 | -- | -- |
| 41.14 | 0.299 | 13.7 | -0.141 | 0.882 | 0.331 | -- | -1.01 | -0.498 | 0.0367 | 19.4 | 858 | -- | -- |
| 42.49 | 0.304 | 13.7 | -0.231 | 0.889 | 0.641 | -- | -- | -0.526 | 0.00127 | 18.6 | 716 | -- | -- |
| 86.89 | 0.434 | 13.7 | -0.101 | -- | 0.258 | -- | -1.2 | -0.485 | -- | 18 | 3238 | -- | -- |
| 47.62 | 0.324 | 13.7 | -0.434 | 0.837 | -- | 0.396 | -- | -0.609 | 0.0915 | -- | -- | -- | -- |
| 48.3 | 0.325 | 13.7 | -0.45 | 0.836 | -- | -- | -- | -0.611 | 0.101 | -- | -- | -- | -- |
| 86.84 | 0.434 | 13.7 | -0.0753 | -- | 0.781 | -- | -- | -0.5 | -- | 16.6 | 7432 | -- | -- |
| 43.39 | 0.307 | 13.7 | -- | 0.818 | 0.673 | -- | -- | -0.484 | 0.0508 | 18.5 | 7887 | -- | -- |
| 92.29 | 0.449 | 13.7 | -0.423 | -- | -- | -- | -- | -0.598 | -- | -- | -- | -- | -- |
| 53.63 | 0.343 | 13.7 | -- | 0.83 | -- | -- | -- | -0.56 | 0.0704 | -- | -- | -- | -- |
| 86.95 | 0.434 | 13.7 | -- | -- | 0.839 | -- | -- | -0.485 | -- | 16.8 | 7483 | -- | -- |
| 97.01 | 0.46 | 13.7 | -- | -- | -- | -- | -- | -0.552 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.79 | humidity | 70 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 3 | 39.15 | humidity | 70 | 43200 | > th | dose dependent | rect. | 19 | 4 |
| 12 | 39.53 | humidity | 60 | 43200 | > th | dose dependent | rect. | 17 | 7 |
| 19 | 39.64 | wind | 1 | 43200 | < th | dose independent | rect. | 13 | 13 |
| 22 | 39.66 | wind | 1 | 43200 | > th | dose independent | rect. | 13 | 13 |
| 46 | 39.93 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 47 | 39.94 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 14 |
| 57 | 40.01 | humidity | 50 | 43200 | > th | dose dependent | sin | 16 | NA |
| 65 | 40.05 | humidity | 80 | 43200 | > th | dose independent | sin | 15 | NA |
| 70 | 40.08 | humidity | 90 | 43200 | < th | dose dependent | rect. | 18 | 4 |
| 72 | 40.08 | wind | 7 | 43200 | > th | dose dependent | rect. | 19 | 10 |
| 80 | 40.10 | humidity | 80 | 43200 | > th | dose independent | rect. | 14 | 13 |
| 83 | 40.11 | temperature | 20 | 720 | < th | dose independent | sin | 6 | NA |
| 84 | 40.11 | wind | 7 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 88 | 40.12 | temperature | 20 | 720 | > th | dose independent | sin | 6 | NA |
| 93 | 40.13 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 11 |
| 94 | 40.13 | humidity | 80 | 43200 | > th | dose independent | rect. | 15 | 11 |
| 105 | 40.15 | humidity | 80 | 43200 | > th | dose independent | rect. | 14 | 22 |
| 110 | 40.16 | humidity | 80 | 43200 | < th | dose independent | rect. | 13 | 21 |
| 119 | 40.16 | humidity | 50 | 43200 | > th | dose dependent | rect. | 10 | 19 |
| 126 | 40.18 | wind | 7 | 43200 | > th | dose independent | rect. | 19 | 10 |
| 130 | 40.18 | humidity | 90 | 43200 | < th | dose dependent | rect. | 13 | 13 |
| 148 | 40.20 | humidity | 80 | 43200 | < th | dose independent | sin | 15 | NA |
| 152 | 40.20 | humidity | 90 | 43200 | < th | dose dependent | sin | 16 | NA |
| 164 | 40.21 | humidity | 50 | 43200 | > th | dose dependent | rect. | 17 | 22 |
| 180 | 40.22 | humidity | 50 | 43200 | > th | dose dependent | rect. | 13 | 22 |
| 182 | 40.23 | humidity | 80 | 43200 | < th | dose independent | rect. | 15 | 10 |
| 203 | 40.24 | wind | 7 | 43200 | < th | dose independent | rect. | 19 | 9 |
| 206 | 40.24 | wind | 7 | 43200 | > th | dose independent | rect. | 18 | 15 |
| 207 | 40.24 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 16 |
| 278 | 40.27 | humidity | 80 | 43200 | < th | dose independent | rect. | 17 | 22 |
| 281 | 40.27 | humidity | 50 | 43200 | > th | dose dependent | no | NA | NA |
| 295 | 40.28 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 317 | 40.29 | wind | 7 | 43200 | < th | dose independent | rect. | 18 | 15 |
| 334 | 40.29 | humidity | 50 | 43200 | > th | dose dependent | rect. | 4 | 23 |
| 338 | 40.30 | humidity | 80 | 43200 | < th | dose independent | rect. | 14 | 13 |
| 382 | 40.32 | humidity | 50 | 43200 | > th | dose dependent | rect. | 23 | 23 |
| 437 | 40.35 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 516 | 40.39 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 15 |
| 588 | 40.42 | wind | 1 | 43200 | < th | dose dependent | rect. | 7 | 18 |
| 601 | 40.42 | humidity | 90 | 43200 | < th | dose dependent | rect. | 17 | 23 |
| 606 | 40.43 | humidity | 90 | 43200 | < th | dose dependent | no | NA | NA |
| 625 | 40.43 | humidity | 90 | 43200 | < th | dose dependent | rect. | 24 | 23 |
| 633 | 40.44 | humidity | 80 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 634 | 40.44 | temperature | 25 | 270 | < th | dose dependent | rect. | 3 | 9 |
| 653 | 40.45 | temperature | 20 | 720 | > th | dose independent | rect. | 24 | 11 |
| 675 | 40.45 | humidity | 90 | 43200 | < th | dose dependent | rect. | 20 | 23 |
| 795 | 40.51 | humidity | 80 | 43200 | < th | dose dependent | rect. | 13 | 2 |
| 823 | 40.52 | wind | 1 | 43200 | < th | dose dependent | sin | 18 | NA |
| 858 | 40.54 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 9 |
| 897 | 40.56 | wind | 5 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 976 | 40.59 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 999 | 40.60 | temperature | 10 | 4320 | > th | dose dependent | rect. | 12 | 1 |