Os05g0100700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Somatic embryogenesis receptor kinase-like protein.
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Os05g0100700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Somatic embryogenesis receptor kinase-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.99 | 0.282 | 9 | 0.411 | 0.476 | -0.712 | 0.301 | -2.66 | 0.0955 | 3.47 | 25.34 | 3159 | -- | -- |
| 42.54 | 0.304 | 9.08 | -0.137 | 0.477 | -0.47 | 0.31 | -- | -0.00706 | 3.52 | 47.56 | 3268 | -- | -- |
| 36.24 | 0.28 | 9 | 0.423 | 0.468 | -0.683 | -- | -2.64 | 0.0995 | 3.47 | 25.66 | 3013 | -- | -- |
| 42.82 | 0.305 | 9.08 | -0.144 | 0.476 | -0.479 | -- | -- | -0.0122 | 3.62 | 54.05 | 3318 | -- | -- |
| 47.16 | 0.32 | 9.01 | 0.47 | -- | -0.678 | -- | -2.55 | 0.108 | -- | 26.9 | 2630 | -- | -- |
| 46.62 | 0.32 | 9.06 | 0.0598 | 0.486 | -- | 0.307 | -- | 0.0834 | 3.43 | -- | -- | -- | -- |
| 46.92 | 0.321 | 9.06 | 0.0543 | 0.488 | -- | -- | -- | 0.0816 | 3.47 | -- | -- | -- | -- |
| 53.75 | 0.341 | 9.09 | -0.149 | -- | -0.559 | -- | -- | -0.0233 | -- | 67.36 | 2616 | -- | -- |
| 43.23 | 0.306 | 9.07 | -- | 0.459 | -0.393 | -- | -- | 0.0159 | 3.53 | 76.99 | 2888 | -- | -- |
| 60.28 | 0.363 | 9.06 | 0.0749 | -- | -- | -- | -- | 0.0945 | -- | -- | -- | -- | -- |
| 46.99 | 0.321 | 9.06 | -- | 0.489 | -- | -- | -- | 0.0755 | 3.47 | -- | -- | -- | -- |
| 54.23 | 0.343 | 9.08 | -- | -- | -0.499 | -- | -- | 0.00465 | -- | 75.96 | 2599 | -- | -- |
| 60.42 | 0.363 | 9.06 | -- | -- | -- | -- | -- | 0.0862 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.12 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 2 |
| 4 | 35.15 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 2 |
| 254 | 35.87 | temperature | 30 | 4320 | < th | dose dependent | sin | 11 | NA |
| 279 | 35.90 | temperature | 10 | 4320 | > th | dose dependent | sin | 11 | NA |
| 464 | 36.21 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 502 | 36.28 | temperature | 25 | 4320 | > th | dose independent | rect. | 22 | 3 |
| 601 | 36.42 | temperature | 25 | 4320 | < th | dose independent | rect. | 22 | 3 |
| 617 | 36.44 | temperature | 25 | 4320 | < th | dose independent | rect. | 21 | 6 |
| 986 | 36.81 | temperature | 25 | 4320 | < th | dose dependent | no | NA | NA |