Os05g0100300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os05g0100300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.29 | 0.298 | 10.2 | 0.188 | 0.193 | -1.08 | -0.757 | 0.298 | -0.000359 | 17.8 | 15.5 | 297 | -- | -- |
| 40.34 | 0.296 | 10.2 | 0.14 | 0.191 | -1.07 | -0.689 | -- | -0.0174 | 17.9 | 15.43 | 292 | -- | -- |
| 40.97 | 0.298 | 10.2 | 0.131 | 0.238 | -1.06 | -- | -0.15 | -0.0188 | 19.6 | 16 | 345 | -- | -- |
| 40.88 | 0.298 | 10.2 | 0.158 | 0.238 | -1.11 | -- | -- | -0.0138 | 20.3 | 15.05 | 399 | -- | -- |
| 42.8 | 0.305 | 10.2 | 0.0515 | -- | -0.971 | -- | -0.398 | -0.0585 | -- | 12.76 | 217 | -- | -- |
| 52.82 | 0.341 | 10.2 | -0.0844 | 0.189 | -- | 0.853 | -- | -0.174 | 3.72 | -- | -- | -- | -- |
| 54.76 | 0.347 | 10.2 | -0.0977 | 0.198 | -- | -- | -- | -0.179 | 2.47 | -- | -- | -- | -- |
| 42.92 | 0.305 | 10.2 | 0.111 | -- | -0.958 | -- | -- | -0.0417 | -- | 14.9 | 256 | -- | -- |
| 41.38 | 0.3 | 10.2 | -- | 0.228 | -1.01 | -- | -- | -0.0394 | 20.7 | 15.25 | 401 | -- | -- |
| 57.08 | 0.353 | 10.2 | -0.0892 | -- | -- | -- | -- | -0.174 | -- | -- | -- | -- | -- |
| 55.01 | 0.347 | 10.2 | -- | 0.197 | -- | -- | -- | -0.168 | 2.46 | -- | -- | -- | -- |
| 43.21 | 0.306 | 10.2 | -- | -- | -0.919 | -- | -- | -0.0598 | -- | 14.99 | 232 | -- | -- |
| 57.29 | 0.353 | 10.2 | -- | -- | -- | -- | -- | -0.164 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.12 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 16 |
| 35 | 37.47 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 43 | 37.64 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 15 |
| 82 | 38.21 | temperature | 15 | 720 | > th | dose dependent | sin | 4 | NA |
| 88 | 38.31 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 163 | 38.92 | temperature | 15 | 270 | > th | dose dependent | sin | 23 | NA |
| 176 | 38.98 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 10 |
| 360 | 40.14 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 7 |
| 365 | 40.17 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 389 | 40.29 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 5 |
| 395 | 40.31 | temperature | 10 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 399 | 40.33 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 405 | 40.34 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 23 |
| 407 | 40.34 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 16 |
| 426 | 40.39 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 442 | 40.44 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 463 | 40.48 | temperature | 30 | 720 | < th | dose dependent | sin | 4 | NA |
| 519 | 40.63 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 3 |
| 639 | 40.89 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 12 |
| 649 | 40.90 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 14 |
| 662 | 40.93 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 3 |
| 716 | 41.04 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 10 |
| 726 | 41.07 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 10 |
| 738 | 41.09 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 17 |
| 746 | 41.10 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 16 |
| 793 | 41.18 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 5 |
| 833 | 41.23 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 8 |
| 864 | 41.29 | temperature | 30 | 270 | < th | dose dependent | sin | 22 | NA |
| 878 | 41.30 | temperature | 25 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 879 | 41.31 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 15 |