Os04g0692400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF248, methyltransferase putative family protein.
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Os04g0692400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF248, methyltransferase putative family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.26 | 0.287 | 8.88 | -1.05 | 0.827 | -0.718 | 0.991 | -0.643 | -0.101 | 5.33 | 27.6 | 19 | -- | -- |
| 37.8 | 0.289 | 8.9 | -1.14 | 0.813 | -0.674 | 0.837 | -- | -0.121 | 5.41 | 27.6 | 19 | -- | -- |
| 39.37 | 0.294 | 8.89 | -1.09 | 0.82 | -0.686 | -- | -0.295 | -0.114 | 5.32 | 27.47 | 18 | -- | -- |
| 39.52 | 0.295 | 8.9 | -1.14 | 0.816 | -0.674 | -- | -- | -0.125 | 5.33 | 27.47 | 18 | -- | -- |
| 68.3 | 0.387 | 8.89 | -1.01 | -- | -0.476 | -- | -0.35 | -0.0247 | -- | 24.1 | 8 | -- | -- |
| 44.42 | 0.312 | 8.86 | -0.991 | 0.699 | -- | 0.827 | -- | 0.0248 | 6.24 | -- | -- | -- | -- |
| 46.1 | 0.318 | 8.86 | -0.982 | 0.703 | -- | -- | -- | 0.0218 | 6.19 | -- | -- | -- | -- |
| 68.51 | 0.387 | 8.89 | -1.06 | -- | -0.446 | -- | -- | -0.0343 | -- | 24.1 | 10 | -- | -- |
| 70.64 | 0.394 | 8.85 | -- | 0.715 | -0.23 | -- | -- | 0.087 | 5.97 | 26.4 | 36 | -- | -- |
| 71.71 | 0.396 | 8.88 | -0.962 | -- | -- | -- | -- | 0.0373 | -- | -- | -- | -- | -- |
| 71.51 | 0.396 | 8.84 | -- | 0.689 | -- | -- | -- | 0.131 | 6.27 | -- | -- | -- | -- |
| 91.22 | 0.445 | 8.84 | -- | -- | 0.554 | -- | -- | 0.208 | -- | 35.29 | 360 | -- | -- |
| 96.15 | 0.458 | 8.85 | -- | -- | -- | -- | -- | 0.144 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.58 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 11 |
| 2 | 36.60 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 13 |
| 7 | 37.03 | temperature | 15 | 90 | > th | dose dependent | rect. | 3 | 21 |
| 9 | 37.04 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 18 |
| 11 | 37.05 | temperature | 15 | 10 | > th | dose dependent | rect. | 5 | 19 |
| 13 | 37.06 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 21 |
| 23 | 37.26 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 29 | 37.31 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 3 |
| 32 | 37.33 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 1 |
| 47 | 37.46 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 18 |
| 49 | 37.47 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 21 |
| 80 | 37.64 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 18 |
| 88 | 37.68 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 22 |
| 129 | 37.83 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 14 |
| 130 | 37.83 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 16 |
| 139 | 37.85 | wind | 1 | 14400 | < th | dose dependent | rect. | 10 | 2 |
| 144 | 37.85 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 145 | 37.86 | temperature | 15 | 720 | > th | dose dependent | rect. | 11 | 4 |
| 148 | 37.86 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 149 | 37.86 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 150 | 37.87 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 166 | 37.89 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 167 | 37.89 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 196 | 37.95 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 197 | 37.96 | temperature | 30 | 720 | < th | dose dependent | sin | 20 | NA |
| 209 | 37.97 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 12 |
| 210 | 37.97 | temperature | 10 | 270 | > th | dose dependent | rect. | 18 | 13 |
| 224 | 37.99 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 247 | 38.03 | radiation | 10 | 720 | < th | dose dependent | rect. | 15 | 12 |
| 263 | 38.06 | radiation | 20 | 720 | < th | dose dependent | rect. | 16 | 10 |
| 264 | 38.06 | radiation | 30 | 720 | < th | dose dependent | rect. | 15 | 12 |
| 310 | 38.12 | wind | 1 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 311 | 38.12 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 2 |
| 319 | 38.13 | wind | 1 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 327 | 38.13 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 331 | 38.15 | temperature | 10 | 720 | > th | dose dependent | sin | 19 | NA |
| 356 | 38.19 | radiation | 10 | 720 | < th | dose dependent | rect. | 16 | 2 |
| 367 | 38.20 | temperature | 25 | 30 | > th | dose independent | rect. | 5 | 19 |
| 380 | 38.21 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 14 |
| 480 | 38.31 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 492 | 38.33 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 1 |
| 497 | 38.33 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 22 |
| 534 | 38.37 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 11 |
| 550 | 38.38 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 6 |
| 559 | 38.39 | temperature | 25 | 10 | < th | dose dependent | sin | 19 | NA |
| 665 | 38.48 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 683 | 38.49 | temperature | 25 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 687 | 38.50 | humidity | 50 | 14400 | < th | dose independent | rect. | 17 | 17 |
| 711 | 38.52 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 737 | 38.54 | radiation | 30 | 720 | < th | dose dependent | rect. | 15 | 3 |
| 757 | 38.56 | temperature | 25 | 10 | > th | dose independent | rect. | 5 | 23 |
| 776 | 38.57 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 19 |
| 805 | 38.60 | humidity | 60 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 839 | 38.62 | humidity | 50 | 14400 | < th | dose dependent | rect. | 17 | 17 |
| 896 | 38.67 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 909 | 38.68 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 3 |
| 920 | 38.68 | temperature | 20 | 1440 | > th | dose dependent | rect. | 22 | 2 |
| 930 | 38.69 | humidity | 80 | 720 | < th | dose independent | rect. | 12 | 3 |
| 964 | 38.71 | radiation | 1 | 720 | < th | dose dependent | rect. | 8 | 19 |