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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0692300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.83 (0.0306) R2 : 0.000764
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0381 (0.0645) R2dN8 : 0.000987 R2N8 : 0.000764
σ : 0.577
deviance : 152.7
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
127.32 0.53 2.83 0.271 0.158 1.2 0.229 2.52 0.155 9.01 23.6 37 -- --
136.02 0.543 2.77 0.602 0.136 0.831 -0.226 -- 0.259 9.64 26.5 36 -- --
127.45 0.526 2.82 0.288 0.159 1.18 -- 2.43 0.153 8.39 23.55 37 -- --
136.2 0.544 2.79 0.577 0.146 0.873 -- -- 0.222 7.56 24.2 36 -- --
128.84 0.529 2.83 0.291 -- 1.14 -- 2.38 0.154 -- 23.59 37 -- --
146.37 0.567 2.82 0.381 0.184 -- 0.435 -- 0.078 3.77 -- -- -- --
146.86 0.568 2.82 0.374 0.192 -- -- -- 0.0754 4.43 -- -- -- --
137.1 0.545 2.78 0.568 -- 0.799 -- -- 0.254 -- 26.4 41 -- --
144.22 0.562 2.81 -- 0.158 0.633 -- -- 0.124 6.55 24.2 36 -- --
148.85 0.57 2.82 0.382 -- -- -- -- 0.0805 -- -- -- -- --
150.56 0.574 2.83 -- 0.199 -- -- -- 0.0337 4.39 -- -- -- --
144.96 0.561 2.8 -- -- 0.629 -- -- 0.155 -- 26.48 37 -- --
152.7 0.577 2.83 -- -- -- -- -- 0.0381 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 118.07 temperature 20 90 < th dose independent rect. 24 20
9 120.29 temperature 20 30 < th dose independent sin 0 NA
13 121.12 temperature 20 30 > th dose independent sin 0 NA
25 121.70 temperature 20 90 < th dose independent rect. 24 11
113 123.63 humidity 80 90 < th dose dependent rect. 24 3
114 123.63 temperature 20 10 < th dose dependent rect. 6 14
115 123.64 humidity 80 90 < th dose independent rect. 24 3
134 124.00 temperature 20 10 < th dose dependent rect. 6 3
151 124.41 temperature 20 90 < th dose independent rect. 5 15
158 124.79 temperature 20 10 > th dose independent rect. 24 13
161 125.11 temperature 20 90 < th dose independent rect. 7 12
170 125.43 temperature 20 10 < th dose independent rect. 6 2
172 125.44 humidity 80 10 < th dose independent rect. 24 2
189 125.52 temperature 25 30 < th dose dependent rect. 24 15
216 125.61 temperature 20 90 < th dose independent rect. 3 17
236 125.77 temperature 25 30 < th dose dependent sin 4 NA
240 125.83 temperature 20 90 > th dose independent rect. 14 23
246 126.01 temperature 25 90 < th dose dependent rect. 24 23
250 126.24 temperature 25 10 < th dose dependent rect. 24 22
260 126.39 humidity 80 90 < th dose dependent rect. 24 7
270 126.54 temperature 25 30 < th dose dependent rect. 24 20
299 126.94 temperature 30 30 < th dose dependent rect. 13 20
338 127.53 humidity 80 720 < th dose independent rect. 23 3
357 127.72 temperature 20 30 > th dose independent rect. 3 10
364 127.79 humidity 80 720 < th dose dependent rect. 23 3
366 127.80 humidity 80 1440 > th dose independent rect. 1 1
386 127.87 humidity 80 720 < th dose independent rect. 24 1
389 127.87 humidity 80 720 < th dose dependent rect. 24 1
458 128.34 humidity 80 270 < th dose independent rect. 22 9
470 128.48 temperature 25 30 < th dose dependent rect. 17 22
491 128.63 temperature 25 90 < th dose dependent rect. 24 8
493 128.64 humidity 80 270 < th dose dependent rect. 22 9
496 128.68 temperature 20 90 > th dose independent rect. 23 22
499 128.69 temperature 20 90 < th dose independent rect. 3 23
503 128.72 temperature 25 30 < th dose dependent rect. 5 23
516 128.83 wind 3 270 > th dose dependent rect. 2 5
523 128.86 temperature 25 30 < th dose dependent rect. 19 23
525 128.87 temperature 25 30 < th dose dependent no NA NA
526 128.87 wind 7 720 > th dose dependent rect. 20 1
531 128.91 temperature 25 30 < th dose dependent rect. 21 23
532 128.92 temperature 20 90 < th dose independent no NA NA
533 128.92 wind 7 720 > th dose independent rect. 20 1
535 128.92 temperature 20 90 < th dose independent rect. 18 18
536 128.92 temperature 20 90 < th dose independent rect. 14 19
562 128.93 temperature 20 90 < th dose independent rect. 18 15
593 128.98 temperature 25 30 < th dose dependent rect. 7 23
630 129.08 temperature 25 30 < th dose dependent rect. 3 23
652 129.23 temperature 20 90 < th dose independent rect. 3 9
657 129.24 wind 5 10 > th dose independent rect. 8 1
685 129.24 wind 5 10 > th dose dependent rect. 8 1
735 129.35 humidity 80 90 < th dose independent rect. 24 8
809 129.65 temperature 20 90 > th dose independent rect. 3 23
824 129.70 temperature 20 90 > th dose independent no NA NA
925 129.95 temperature 20 30 < th dose independent rect. 5 23
954 130.05 temperature 20 30 < th dose independent rect. 7 23
960 130.07 wind 3 270 > th dose independent rect. 1 6
987 130.19 temperature 20 10 < th dose independent rect. 4 5