Os04g0691900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Chaperonin Cpn60/TCP-1 family protein.
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Os04g0691900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Chaperonin Cpn60/TCP-1 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 468.5 | 1.02 | 9.07 | -0.911 | 4.87 | -2.21 | 0.865 | 5.16 | -0.685 | 9.22 | 20.07 | 1385 | 11 | 2.3 |
| 507.84 | 1.05 | 9.06 | -0.762 | 4.82 | -2.45 | 0.855 | -- | -0.721 | 9 | 28.39 | 1247 | 11.6 | 5.13 |
| 466.92 | 1.01 | 9.08 | -0.861 | 4.76 | -2.24 | -- | 5.17 | -0.664 | 9.16 | 20.06 | 1291 | 10.9 | 2.38 |
| 506.29 | 1.05 | 9.05 | -0.547 | 4.76 | -2.56 | -- | -- | -0.675 | 8.96 | 27.65 | 1211 | 11.5 | 5.77 |
| 606.43 | 1.15 | 9.14 | -0.673 | -- | -5.14 | -- | 0.821 | -0.397 | -- | 159.7 | 793 | 11.2 | 6.68 |
| 648.8 | 1.19 | 8.93 | -0.354 | 4.98 | -- | 0.393 | -- | -0.137 | 9.25 | -- | -- | -- | -- |
| 649.35 | 1.19 | 8.93 | -0.34 | 4.97 | -- | -- | -- | -0.136 | 9.25 | -- | -- | -- | -- |
| 591.28 | 1.13 | 9.17 | -0.498 | -- | -5.5 | -- | -- | -0.513 | -- | 112.7 | 810 | 11.2 | 6.3 |
| 515.29 | 1.06 | 9.04 | -- | 4.71 | -2.69 | -- | -- | -0.64 | 8.96 | 22.7 | 1199 | 11.5 | 6 |
| 2087.85 | 2.14 | 9.06 | -0.36 | -- | -- | -- | -- | -0.114 | -- | -- | -- | -- | -- |
| 652.41 | 1.19 | 8.92 | -- | 4.97 | -- | -- | -- | -0.0986 | 9.26 | -- | -- | -- | -- |
| 596.08 | 1.14 | 9.14 | -- | -- | -5.49 | -- | -- | -0.432 | -- | 113 | 809 | 11.2 | 6.28 |
| 2091.28 | 2.13 | 9.05 | -- | -- | -- | -- | -- | -0.0738 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 482.53 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 2 | 483.49 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 5 |
| 3 | 484.01 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 7 |
| 5 | 484.80 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 9 |
| 11 | 485.07 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 17 |
| 19 | 487.95 | radiation | 10.0 | 1440 | < th | dose dependent | sin | 21 | NA |
| 20 | 488.22 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 8 | 10 |
| 23 | 488.91 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 13 | 4 |
| 28 | 489.84 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 8 | 12 |
| 37 | 490.12 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 8 | 20 |
| 112 | 494.56 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 115 | 494.72 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 11 | 22 |
| 164 | 496.75 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 12 | 8 |
| 173 | 496.99 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 12 | 16 |
| 195 | 497.47 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 218 | 498.22 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 243 | 499.48 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 257 | 499.79 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 8 | 10 |
| 292 | 500.93 | radiation | 10.0 | 1440 | > th | dose independent | sin | 22 | NA |
| 300 | 501.40 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 16 | 23 |
| 353 | 502.22 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 359 | 502.84 | radiation | 10.0 | 1440 | > th | dose independent | no | NA | NA |
| 360 | 502.84 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 5 | 13 |
| 455 | 503.19 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 11 | 7 |
| 522 | 504.47 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 14 | 23 |
| 592 | 506.13 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 16 | 11 |
| 612 | 506.45 | radiation | 10.0 | 1440 | < th | dose independent | sin | 17 | NA |
| 679 | 507.46 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 701 | 508.13 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 2 | 16 |
| 734 | 508.37 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 19 | 23 |
| 775 | 508.54 | radiation | 20.0 | 1440 | < th | dose dependent | no | NA | NA |
| 869 | 510.28 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 874 | 510.36 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 12 | 4 |
| 884 | 510.61 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 12 | 6 |
| 938 | 511.33 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 11 | 23 |