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Os04g0691600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to 30S ribosomal protein S17.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.8 (0.0249) R2 : 0.707
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.97 (0.0618) R2dC : 0.656 R2C : 0.639
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.474 (0.0522) R2dN8 : 0.0684 R2N8 : 0.0515
σ : 0.468
deviance : 100.12
__
_____
C
peak time of C : 21.1
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
81.65 0.425 12.9 -0.195 1.79 0.735 -0.879 0.743 -0.658 20.8 25.91 1043 -- --
81.81 0.421 12.9 -0.382 1.87 0.802 -0.714 -- -0.726 20.8 25.8 1150 -- --
83.47 0.426 12.8 -0.133 1.92 0.694 -- 0.76 -0.638 20.8 26 1247 -- --
83.58 0.426 12.9 -0.359 1.87 0.799 -- -- -0.729 20.8 25.8 1152 -- --
190.34 0.643 12.8 -0.684 -- 1.73 -- 0.31 -0.843 -- 25.9 699 -- --
98.26 0.465 12.8 -0.146 1.96 -- -0.647 -- -0.488 21.1 -- -- -- --
99.72 0.468 12.8 -0.124 1.97 -- -- -- -0.488 21.1 -- -- -- --
187.29 0.637 12.9 -0.653 -- 1.71 -- -- -0.959 -- 25.98 679 -- --
86.71 0.434 12.9 -- 1.9 0.693 -- -- -0.661 20.8 25.83 1181 -- --
322.33 0.839 12.8 -0.12 -- -- -- -- -0.5 -- -- -- -- --
100.12 0.468 12.8 -- 1.97 -- -- -- -0.474 21.1 -- -- -- --
197.27 0.654 12.9 -- -- 1.6 -- -- -0.9 -- 25.85 678 -- --
322.71 0.838 12.8 -- -- -- -- -- -0.486 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 77.93 temperature 30 1440 < th dose dependent rect. 9 2
3 78.26 temperature 10 1440 > th dose dependent rect. 9 2
6 78.32 humidity 80 43200 > th dose dependent rect. 20 6
9 78.41 humidity 80 43200 > th dose dependent rect. 21 3
14 78.46 humidity 80 43200 > th dose dependent rect. 18 11
33 78.82 humidity 70 43200 > th dose dependent rect. 11 19
41 78.95 temperature 30 270 < th dose dependent rect. 3 19
68 79.26 temperature 25 270 < th dose independent rect. 4 17
74 79.33 humidity 80 43200 > th dose dependent sin 12 NA
95 79.56 temperature 15 270 > th dose dependent rect. 23 16
126 79.82 humidity 70 43200 > th dose dependent sin 16 NA
138 79.90 wind 9 43200 > th dose dependent rect. 19 13
150 80.02 wind 1 43200 > th dose independent rect. 14 7
152 80.02 humidity 70 43200 > th dose dependent rect. 21 21
155 80.03 humidity 70 43200 > th dose dependent rect. 22 18
184 80.17 temperature 30 270 < th dose dependent sin 3 NA
193 80.24 humidity 70 43200 > th dose dependent rect. 17 23
197 80.26 humidity 80 43200 > th dose independent rect. 24 18
230 80.39 humidity 80 43200 > th dose independent rect. 1 16
240 80.43 humidity 70 43200 > th dose dependent no NA NA
248 80.48 humidity 90 43200 < th dose independent rect. 23 6
255 80.50 humidity 80 43200 > th dose independent rect. 2 14
261 80.52 humidity 90 43200 < th dose independent rect. 21 8
287 80.62 humidity 70 43200 > th dose dependent rect. 14 23
297 80.69 wind 1 43200 < th dose independent rect. 14 5
306 80.75 temperature 30 270 < th dose dependent rect. 3 10
319 80.79 humidity 90 43200 < th dose independent rect. 24 4
324 80.81 wind 9 43200 > th dose independent rect. 19 14
329 80.82 humidity 80 43200 < th dose independent rect. 24 18
336 80.85 humidity 90 43200 < th dose independent rect. 1 2
338 80.86 humidity 80 14400 < th dose independent rect. 17 1
340 80.86 wind 1 43200 < th dose independent rect. 13 8
343 80.87 temperature 25 270 > th dose independent rect. 8 10
347 80.88 humidity 80 14400 > th dose independent rect. 17 1
359 80.91 wind 1 43200 > th dose independent rect. 16 2
363 80.91 humidity 70 43200 > th dose dependent rect. 2 23
378 80.96 temperature 15 270 > th dose dependent rect. 21 20
405 81.05 wind 1 43200 < th dose independent rect. 16 2
410 81.06 humidity 80 43200 < th dose independent rect. 23 20
417 81.08 humidity 50 14400 > th dose dependent rect. 21 1
456 81.23 humidity 80 14400 < th dose independent rect. 16 4
459 81.25 wind 7 43200 < th dose independent rect. 6 1
463 81.26 wind 1 43200 > th dose independent rect. 13 10
468 81.27 humidity 80 14400 > th dose dependent rect. 18 4
475 81.31 temperature 10 270 > th dose dependent sin 5 NA
485 81.33 temperature 25 270 < th dose independent sin 23 NA
499 81.36 humidity 80 14400 > th dose independent rect. 16 4
503 81.37 wind 7 43200 > th dose independent rect. 6 1
529 81.46 wind 1 43200 < th dose dependent rect. 16 2
533 81.46 temperature 30 1440 < th dose dependent rect. 7 12
539 81.48 humidity 70 14400 > th dose dependent rect. 18 1
565 81.56 wind 9 43200 < th dose independent rect. 19 14
568 81.56 temperature 10 1440 > th dose dependent rect. 7 12
574 81.58 temperature 25 270 > th dose independent sin 23 NA
580 81.60 humidity 70 43200 > th dose dependent sin 5 NA
596 81.63 temperature 20 43200 < th dose dependent rect. 21 1
607 81.65 temperature 20 14400 > th dose independent rect. 12 15
615 81.66 temperature 25 14400 < th dose dependent rect. 10 17
621 81.67 temperature 25 14400 < th dose dependent rect. 11 15
649 81.71 temperature 20 14400 < th dose independent rect. 12 15
651 81.71 wind 5 14400 > th dose dependent rect. 7 2
670 81.73 humidity 90 14400 < th dose independent rect. 20 4
681 81.75 temperature 20 14400 > th dose independent sin 15 NA
688 81.75 temperature 25 14400 < th dose dependent sin 17 NA
690 81.75 wind 1 43200 < th dose dependent rect. 13 6
699 81.76 humidity 80 43200 > th dose independent sin 3 NA
723 81.78 temperature 25 14400 < th dose dependent rect. 1 21
726 81.79 temperature 10 1440 > th dose dependent sin 1 NA
731 81.79 temperature 25 14400 < th dose dependent rect. 1 18
794 81.82 temperature 25 14400 < th dose dependent rect. 21 22
801 81.83 temperature 20 14400 < th dose independent sin 15 NA
805 81.83 humidity 80 43200 > th dose independent rect. 10 18
808 81.83 temperature 25 14400 < th dose dependent no NA NA
864 81.85 temperature 25 14400 < th dose dependent rect. 16 23
870 81.86 temperature 25 14400 < th dose dependent rect. 3 13
881 81.87 temperature 20 14400 > th dose independent rect. 19 8
902 81.88 humidity 90 14400 < th dose independent rect. 21 2
917 81.89 temperature 25 720 > th dose independent sin 4 NA
920 81.89 humidity 80 43200 < th dose dependent rect. 5 3
944 81.91 humidity 90 43200 > th dose independent rect. 2 1
952 81.91 temperature 25 14400 < th dose dependent sin 2 NA
978 81.92 temperature 25 270 > th dose dependent rect. 18 21
984 81.93 temperature 20 14400 < th dose independent rect. 21 5