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Os04g0691400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : TGF-beta receptor, type I/II extracellular region family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.99 (0.0355) R2 : 0.598
β1 : 0.854 (0.132) R2dD : 0.0405 R2D : 0.0102
β2 : 2.15 (0.0917) R2dC : 0.49 R2C : 0.492
β3 : 1.78 (0.182) R2dE : 0.0949 R2E : 0.0769
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.154 (0.0784) R2dN8 : 0.00505 R2N8 : -0.0146
σ : 0.656
deviance : 198.58
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_____
C
peak time of C : 17.9
E
wheather : radiation
threshold : 1.372
memory length : 1477
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
196.98 0.659 6.99 0.861 2.14 1.72 0.911 -0.0158 0.15 18 1.37 1467 -- --
196.94 0.654 6.99 0.858 2.15 1.74 0.869 -- 0.151 18 1.38 1473 -- --
198.54 0.656 6.99 0.852 2.16 1.79 -- 0.179 0.152 17.9 1.37 1477 -- --
198.58 0.656 6.99 0.854 2.15 1.78 -- -- 0.154 17.9 1.372 1477 -- --
437.3 0.974 6.96 0.755 -- 1.85 -- 0.279 0.114 -- 1.477 1461 -- --
235.2 0.719 7.05 0.571 2.17 -- 1.13 -- -0.0718 18.3 -- -- -- --
238.19 0.723 7.04 0.559 2.18 -- -- -- -0.0671 18.2 -- -- -- --
437.32 0.974 6.95 0.8 -- 1.85 -- -- 0.133 -- 1.493 1463 -- --
216.02 0.685 6.99 -- 2.14 1.5 -- -- 0.0794 17.9 1.628 1482 -- --
484.65 1.03 7 0.499 -- -- -- -- -0.115 -- -- -- -- --
246.43 0.734 7.06 -- 2.17 -- -- -- -0.129 18.2 -- -- -- --
452.21 0.99 6.97 -- -- 1.54 -- -- 0.0469 -- 1.85 1463 -- --
491.21 1.03 7.02 -- -- -- -- -- -0.171 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 193.46 radiation 1.0 270 < th dose independent rect. 21 21
2 193.49 temperature 10.0 90 > th dose dependent rect. 16 8
3 194.36 humidity 90.0 30 < th dose independent rect. 16 19
4 194.40 radiation 1.0 270 < th dose dependent rect. 21 21
5 194.55 precipitation 0.1 270 < th dose independent rect. 2 9
6 194.55 precipitation 0.1 270 < th dose dependent rect. 2 9
10 195.54 radiation 1.0 720 < th dose independent rect. 23 19
11 195.73 temperature 15.0 270 > th dose independent rect. 2 9
12 195.89 wind 9.0 270 < th dose dependent rect. 3 8
13 195.94 precipitation 0.1 270 < th dose independent rect. 14 9
14 195.94 precipitation 0.1 270 < th dose dependent rect. 14 9
16 196.23 temperature 15.0 10 > th dose independent rect. 16 8
18 196.34 radiation 10.0 90 < th dose dependent rect. 23 18
19 196.47 radiation 1.0 30 > th dose independent sin 5 NA
20 196.49 radiation 1.0 90 < th dose independent rect. 23 18
22 196.71 wind 7.0 270 < th dose independent rect. 2 9
24 196.71 humidity 80.0 720 > th dose independent rect. 18 20
27 196.90 radiation 1.0 720 < th dose independent sin 2 NA
32 197.03 precipitation 0.1 270 < th dose independent rect. 1 22
33 197.03 precipitation 0.1 270 < th dose dependent rect. 1 22
36 197.06 precipitation 0.1 270 < th dose independent rect. 16 17
38 197.06 precipitation 0.1 270 < th dose dependent rect. 16 17
39 197.17 radiation 10.0 10 < th dose dependent sin 8 NA
43 197.27 radiation 1.0 1440 < th dose independent sin 0 NA
44 197.27 humidity 80.0 10 > th dose dependent rect. 6 23
45 197.30 temperature 15.0 270 > th dose independent rect. 14 9
46 197.31 humidity 80.0 720 > th dose independent rect. 24 22
60 197.49 wind 9.0 270 < th dose independent rect. 14 9
74 197.71 radiation 1.0 1440 > th dose independent sin 0 NA
77 197.73 wind 1.0 270 > th dose independent rect. 14 9
78 197.77 radiation 1.0 270 < th dose independent sin 11 NA
82 197.79 humidity 80.0 1440 > th dose independent rect. 1 12
84 197.84 humidity 80.0 1440 < th dose independent rect. 1 12
87 197.84 radiation 1.0 1440 < th dose independent rect. 7 23
90 197.87 wind 1.0 90 > th dose independent rect. 24 16
95 197.99 atmosphere 1015.0 270 < th dose independent rect. 23 15
98 198.03 radiation 1.0 1440 > th dose independent rect. 4 14
117 198.14 temperature 10.0 270 > th dose independent rect. 23 15
118 198.14 atmosphere 995.0 270 > th dose independent rect. 23 15
161 198.30 radiation 1.0 1440 > th dose independent rect. 7 23
173 198.33 radiation 1.0 1440 < th dose independent no NA NA
204 198.40 radiation 1.0 1440 < th dose independent rect. 11 23
205 198.42 precipitation 0.1 270 < th dose independent rect. 3 19
208 198.42 precipitation 0.1 270 < th dose dependent rect. 3 19
220 198.52 humidity 50.0 720 > th dose dependent rect. 17 19
226 198.62 radiation 1.0 720 < th dose dependent rect. 5 22
236 198.73 atmosphere 995.0 270 > th dose independent rect. 2 9
237 198.73 atmosphere 1015.0 270 < th dose independent rect. 2 9
238 198.73 temperature 10.0 270 > th dose independent rect. 11 15
243 198.77 precipitation 0.1 10 < th dose independent rect. 16 8
245 198.77 precipitation 0.1 10 < th dose dependent rect. 16 8
248 198.79 radiation 1.0 1440 > th dose independent no NA NA
309 198.88 radiation 1.0 1440 < th dose independent rect. 15 23
313 198.94 radiation 1.0 1440 > th dose independent rect. 11 23
314 198.95 wind 9.0 10 < th dose independent rect. 16 8
326 199.09 wind 9.0 270 < th dose independent rect. 23 15
338 199.19 radiation 30.0 10 < th dose independent rect. 16 8
340 199.20 radiation 1.0 30 < th dose independent sin 7 NA
356 199.27 radiation 1.0 1440 > th dose independent rect. 15 23
365 199.31 atmosphere 1015.0 10 < th dose independent rect. 24 16
367 199.34 humidity 90.0 30 < th dose independent rect. 18 17
375 199.37 humidity 50.0 270 > th dose independent rect. 2 9
381 199.40 temperature 10.0 10 > th dose independent rect. 24 16
408 199.59 radiation 1.0 720 < th dose dependent sin 3 NA
439 199.72 wind 1.0 30 > th dose independent rect. 16 8
444 199.74 atmosphere 995.0 10 > th dose independent rect. 16 8
458 199.79 radiation 1.0 720 < th dose dependent rect. 23 19
468 199.89 radiation 1.0 270 > th dose independent sin 11 NA
480 199.94 radiation 10.0 10 < th dose dependent rect. 23 17
482 199.96 atmosphere 995.0 10 > th dose independent rect. 24 16
484 200.00 wind 9.0 270 < th dose independent rect. 11 15
496 200.01 humidity 50.0 90 > th dose dependent rect. 23 17
508 200.10 humidity 90.0 90 < th dose dependent sin 10 NA
512 200.12 radiation 40.0 10 < th dose dependent rect. 16 8
528 200.21 humidity 70.0 10 > th dose dependent rect. 23 19
531 200.22 wind 7.0 270 < th dose independent rect. 16 17
535 200.23 radiation 1.0 270 < th dose dependent sin 11 NA
547 200.29 humidity 80.0 1440 < th dose independent sin 5 NA
577 200.41 humidity 70.0 720 > th dose dependent rect. 1 21
579 200.43 precipitation 0.1 270 < th dose independent rect. 13 22
581 200.43 precipitation 0.1 270 < th dose dependent rect. 13 22
593 200.50 humidity 70.0 10 > th dose dependent rect. 23 17
603 200.57 precipitation 0.1 270 < th dose independent rect. 15 19
604 200.57 precipitation 0.1 270 < th dose dependent rect. 15 19
620 200.67 humidity 50.0 270 > th dose independent rect. 23 15
634 200.74 radiation 40.0 270 < th dose independent rect. 14 9
637 200.76 temperature 15.0 270 > th dose independent rect. 16 17
641 200.79 temperature 15.0 90 > th dose independent rect. 16 19
649 200.82 radiation 30.0 14400 < th dose independent rect. 17 8
669 200.90 radiation 1.0 720 < th dose dependent rect. 1 17
695 201.02 radiation 1.0 90 < th dose independent rect. 23 9
701 201.04 radiation 1.0 720 < th dose dependent rect. 4 14
712 201.11 wind 7.0 90 < th dose independent rect. 16 19
728 201.21 radiation 1.0 30 > th dose independent rect. 16 20
730 201.23 radiation 1.0 1440 < th dose dependent sin 0 NA
744 201.26 humidity 50.0 10 > th dose dependent rect. 24 16
747 201.28 wind 1.0 270 > th dose independent rect. 9 7
751 201.29 humidity 80.0 1440 > th dose independent sin 5 NA
754 201.29 temperature 10.0 10 > th dose dependent rect. 5 19
761 201.30 radiation 1.0 30 > th dose independent rect. 18 18
770 201.34 humidity 90.0 30 < th dose independent rect. 16 23
789 201.44 wind 9.0 10 < th dose independent rect. 24 16
806 201.51 radiation 1.0 30 > th dose independent rect. 5 7
870 201.64 radiation 1.0 30 < th dose independent rect. 19 23
898 201.78 humidity 80.0 720 > th dose independent sin 9 NA
951 201.95 radiation 1.0 1440 < th dose dependent rect. 7 11