Os04g0691100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Serine/threonine-protein kinase SAPK5 (EC 2.7.1.37) (Osmotic stress/abscisic acid-activated protein kinase 5).
FiT-DB / Search/ Help/ Sample detail
|
Os04g0691100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Serine/threonine-protein kinase SAPK5 (EC 2.7.1.37) (Osmotic stress/abscisic acid-activated protein kinase 5).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.45 | 0.246 | 12.7 | 1.14 | 0.8 | -0.519 | -0.571 | 0.0406 | 0.452 | 17.5 | 23.78 | 49 | -- | -- |
| 27.46 | 0.244 | 12.7 | 1.15 | 0.8 | -0.521 | -0.568 | -- | 0.453 | 17.5 | 23.55 | 48 | -- | -- |
| 28.21 | 0.249 | 12.7 | 1.16 | 0.788 | -0.427 | -- | 0.225 | 0.444 | 17.8 | 25.03 | 48 | -- | -- |
| 28.21 | 0.247 | 12.7 | 1.15 | 0.795 | -0.488 | -- | -- | 0.45 | 17.7 | 23.98 | 48 | -- | -- |
| 59.83 | 0.362 | 12.7 | 1.12 | -- | -0.408 | -- | 0.43 | 0.421 | -- | 38.87 | 48 | -- | -- |
| 31.19 | 0.262 | 12.7 | 1.16 | 0.776 | -- | -0.374 | -- | 0.449 | 18.3 | -- | -- | -- | -- |
| 31.52 | 0.263 | 12.7 | 1.16 | 0.774 | -- | -- | -- | 0.448 | 18.3 | -- | -- | -- | -- |
| 60.01 | 0.362 | 12.7 | 1.13 | -- | -0.432 | -- | -- | 0.422 | -- | 38.77 | 48 | -- | -- |
| 60.38 | 0.362 | 12.8 | -- | 0.729 | -0.826 | -- | -- | 0.32 | 18.1 | 54.12 | 85 | -- | -- |
| 62.66 | 0.37 | 12.7 | 1.14 | -- | -- | -- | -- | 0.431 | -- | -- | -- | -- | -- |
| 67.22 | 0.384 | 12.8 | -- | 0.759 | -- | -- | -- | 0.318 | 18.4 | -- | -- | -- | -- |
| 90.11 | 0.442 | 12.8 | -- | -- | -1.06 | -- | -- | 0.27 | -- | 55.37 | 85 | -- | -- |
| 97.15 | 0.46 | 12.8 | -- | -- | -- | -- | -- | 0.304 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.83 | radiation | 40.0 | 90 | < th | dose independent | rect. | 5 | 10 |
| 5 | 24.25 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 5 | 21 |
| 8 | 24.39 | radiation | 40.0 | 30 | < th | dose independent | rect. | 5 | 21 |
| 10 | 24.43 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 4 | 10 |
| 41 | 24.81 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 5 | 10 |
| 64 | 25.05 | humidity | 60.0 | 90 | > th | dose independent | rect. | 5 | 10 |
| 69 | 25.11 | temperature | 20.0 | 720 | > th | dose independent | rect. | 5 | 1 |
| 87 | 25.23 | radiation | 10.0 | 720 | < th | dose independent | rect. | 21 | 10 |
| 91 | 25.27 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 4 | 4 |
| 112 | 25.40 | temperature | 20.0 | 720 | > th | dose independent | rect. | 4 | 3 |
| 168 | 25.64 | radiation | 30.0 | 270 | < th | dose independent | rect. | 3 | 21 |
| 209 | 25.79 | radiation | 10.0 | 720 | < th | dose independent | rect. | 5 | 2 |
| 216 | 25.80 | radiation | 20.0 | 720 | < th | dose dependent | rect. | 21 | 10 |
| 251 | 25.94 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 5 | 1 |
| 280 | 26.02 | radiation | 40.0 | 720 | < th | dose independent | rect. | 18 | 15 |
| 289 | 26.04 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 21 |
| 302 | 26.10 | radiation | 30.0 | 90 | < th | dose independent | rect. | 21 | 14 |
| 370 | 26.24 | humidity | 60.0 | 90 | > th | dose independent | rect. | 5 | 20 |
| 414 | 26.31 | radiation | 30.0 | 270 | < th | dose independent | sin | 4 | NA |
| 430 | 26.32 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 5 | 20 |
| 459 | 26.39 | radiation | 40.0 | 270 | < th | dose independent | rect. | 11 | 13 |
| 477 | 26.43 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 531 | 26.53 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 10 | 16 |
| 563 | 26.57 | radiation | 30.0 | 720 | < th | dose dependent | rect. | 5 | 3 |
| 582 | 26.61 | radiation | 20.0 | 90 | < th | dose independent | rect. | 11 | 14 |
| 597 | 26.63 | radiation | 20.0 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 602 | 26.65 | wind | 9.0 | 4320 | < th | dose independent | rect. | 3 | 3 |
| 606 | 26.66 | radiation | 40.0 | 10 | < th | dose independent | sin | 0 | NA |
| 626 | 26.68 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 11 | 14 |
| 650 | 26.71 | radiation | 30.0 | 10 | < th | dose independent | rect. | 23 | 15 |
| 658 | 26.72 | humidity | 60.0 | 90 | > th | dose independent | rect. | 5 | 6 |
| 667 | 26.74 | radiation | 30.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 699 | 26.77 | humidity | 60.0 | 90 | > th | dose independent | rect. | 5 | 14 |
| 722 | 26.79 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 5 | 20 |
| 754 | 26.83 | radiation | 20.0 | 720 | > th | dose independent | rect. | 11 | 1 |
| 795 | 26.86 | radiation | 40.0 | 10 | > th | dose independent | rect. | 13 | 23 |
| 858 | 26.93 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 868 | 26.94 | radiation | 30.0 | 10 | < th | dose independent | rect. | 23 | 13 |
| 877 | 26.95 | wind | 5.0 | 90 | < th | dose independent | rect. | 1 | 4 |
| 889 | 26.96 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 6 | 6 |
| 908 | 26.97 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 24 | 12 |
| 912 | 26.97 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 18 | 18 |
| 927 | 26.98 | radiation | 30.0 | 10 | < th | dose independent | rect. | 21 | 17 |
| 950 | 27.00 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 24 | 13 |
| 957 | 27.00 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 9 |
| 960 | 27.00 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 24 | 13 |
| 963 | 27.01 | wind | 9.0 | 270 | < th | dose independent | rect. | 24 | 13 |
| 972 | 27.02 | temperature | 15.0 | 270 | > th | dose independent | rect. | 24 | 13 |
| 975 | 27.02 | atmosphere | 1000.0 | 270 | > th | dose dependent | rect. | 24 | 3 |