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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0690600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.38 (0.0258) R2 : 0.369
β1 : 1.43 (0.0959) R2dD : 0.345 R2D : 0.223
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.32 (0.135) R2dE : 0.161 R2E : 0.0298
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.201 (0.0589) R2dN8 : 0.0261 R2N8 : -0.0522
σ : 0.472
deviance : 102.59
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 2.133
memory length : 2906
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
91.26 0.449 3.46 1.03 0.249 1.44 1.52 2.74 0.0792 18 0.82 4339 -- --
94.35 0.452 3.45 1.45 0.262 1.21 1.67 -- 0.134 17.9 2.002 2909 -- --
96.87 0.458 3.47 1.02 0.266 1.47 -- 2.79 0.0857 18.1 0.7396 4343 -- --
99.33 0.464 3.41 1.46 0.26 1.3 -- -- 0.172 17.5 1.729 2914 -- --
100.31 0.466 3.46 0.984 -- 1.5 -- 2.96 0.0751 -- 0.74 4342 -- --
113.54 0.5 3.44 1.2 0.27 -- 1.58 -- -0.0301 18 -- -- -- --
119.49 0.512 3.44 1.19 0.283 -- -- -- -0.025 18.7 -- -- -- --
102.59 0.472 3.38 1.43 -- 1.32 -- -- 0.201 -- 2.133 2906 -- --
147.35 0.565 3.44 -- 0.371 0.802 -- -- -0.0268 17.1 10 3117 -- --
123.69 0.52 3.44 1.18 -- -- -- -- -0.0305 -- -- -- -- --
156.58 0.585 3.47 -- 0.27 -- -- -- -0.157 19 -- -- -- --
145.67 0.562 3.43 -- -- 0.905 -- -- 0.0305 -- 9.923 5823 -- --
160.4 0.591 3.46 -- -- -- -- -- -0.161 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 85.92 humidity 90.0 14400 > th dose dependent rect. 24 2
5 86.75 humidity 90.0 14400 > th dose dependent rect. 24 7
9 86.95 humidity 90.0 14400 > th dose dependent rect. 5 2
25 87.36 radiation 1.0 4320 < th dose dependent rect. 18 10
28 87.40 radiation 1.0 4320 < th dose dependent rect. 18 8
42 87.60 radiation 1.0 4320 < th dose dependent rect. 18 2
46 87.61 radiation 1.0 4320 < th dose dependent rect. 18 4
59 87.78 radiation 1.0 14400 < th dose independent rect. 18 10
62 87.80 radiation 1.0 14400 < th dose independent rect. 18 2
63 87.80 radiation 1.0 14400 < th dose independent rect. 18 7
79 87.90 humidity 90.0 14400 > th dose independent rect. 22 5
90 88.02 radiation 40.0 14400 < th dose dependent rect. 18 10
92 88.03 radiation 1.0 14400 > th dose independent rect. 18 1
105 88.05 humidity 90.0 14400 > th dose dependent sin 6 NA
107 88.07 humidity 90.0 14400 > th dose independent rect. 5 2
110 88.08 humidity 90.0 14400 > th dose independent rect. 22 9
118 88.16 wind 9.0 43200 > th dose independent rect. 16 1
131 88.21 radiation 40.0 14400 < th dose dependent rect. 18 8
132 88.22 humidity 90.0 43200 > th dose independent rect. 20 1
148 88.30 humidity 90.0 14400 > th dose independent rect. 24 1
153 88.33 humidity 60.0 43200 > th dose independent rect. 15 1
160 88.39 radiation 40.0 14400 < th dose dependent rect. 18 2
163 88.42 humidity 60.0 43200 < th dose independent rect. 15 1
167 88.44 humidity 90.0 43200 > th dose independent rect. 9 1
172 88.48 precipitation 0.1 43200 > th dose independent rect. 16 1
173 88.48 precipitation 0.1 43200 > th dose independent rect. 15 3
175 88.49 humidity 90.0 43200 < th dose independent rect. 19 2
176 88.50 precipitation 0.1 43200 < th dose independent rect. 15 3
178 88.50 precipitation 0.1 43200 < th dose dependent rect. 15 3
180 88.52 precipitation 0.1 43200 < th dose independent rect. 16 1
181 88.52 precipitation 0.1 43200 < th dose dependent rect. 16 1
216 88.71 precipitation 0.1 43200 > th dose dependent rect. 16 1
238 88.83 radiation 1.0 14400 < th dose dependent rect. 18 16
260 88.92 radiation 1.0 14400 < th dose independent rect. 18 20
274 88.99 atmosphere 1005.0 43200 > th dose independent rect. 16 1
275 88.99 radiation 1.0 14400 > th dose independent rect. 18 20
296 89.08 radiation 1.0 14400 < th dose independent rect. 18 16
301 89.09 humidity 90.0 43200 < th dose independent rect. 9 1
309 89.13 humidity 90.0 43200 > th dose dependent rect. 8 1
311 89.15 humidity 80.0 43200 > th dose independent rect. 14 1
318 89.17 humidity 80.0 43200 < th dose independent rect. 13 2
320 89.17 humidity 80.0 43200 > th dose independent rect. 13 4
334 89.21 humidity 90.0 14400 < th dose independent rect. 22 4
337 89.22 atmosphere 1005.0 43200 > th dose independent rect. 13 4
345 89.24 humidity 80.0 43200 < th dose independent rect. 13 4
351 89.25 humidity 80.0 43200 > th dose independent rect. 16 1
363 89.29 atmosphere 1005.0 43200 < th dose independent rect. 16 1
373 89.33 humidity 90.0 43200 > th dose dependent rect. 20 1
378 89.35 humidity 90.0 14400 < th dose independent rect. 6 1
388 89.38 humidity 90.0 14400 < th dose independent rect. 21 6
391 89.40 atmosphere 1005.0 43200 < th dose independent rect. 13 4
393 89.40 humidity 90.0 14400 < th dose independent rect. 21 10
398 89.42 humidity 80.0 43200 > th dose independent rect. 10 8
428 89.54 wind 9.0 43200 < th dose independent rect. 16 1
439 89.56 wind 9.0 43200 > th dose dependent rect. 18 1
474 89.64 humidity 80.0 43200 < th dose independent rect. 10 7
518 89.72 radiation 1.0 14400 < th dose dependent sin 11 NA
520 89.72 precipitation 0.1 43200 > th dose dependent rect. 14 6
547 89.75 radiation 1.0 14400 < th dose dependent rect. 7 23
562 89.77 radiation 1.0 14400 > th dose independent rect. 5 9
571 89.78 radiation 1.0 14400 < th dose independent rect. 5 9
576 89.78 radiation 1.0 14400 < th dose dependent rect. 7 20
652 89.87 radiation 1.0 14400 < th dose independent rect. 2 12
697 89.88 radiation 1.0 14400 < th dose dependent rect. 7 13
719 89.90 wind 3.0 43200 < th dose dependent rect. 3 1
763 89.95 radiation 1.0 14400 < th dose dependent no NA NA
766 89.95 radiation 1.0 14400 < th dose dependent rect. 5 22
767 89.95 radiation 1.0 14400 < th dose dependent rect. 22 22
769 89.95 radiation 1.0 14400 < th dose dependent rect. 3 23
785 89.96 radiation 1.0 14400 < th dose dependent rect. 23 20
815 89.98 radiation 1.0 14400 < th dose dependent rect. 9 23
843 90.01 wind 9.0 43200 > th dose independent rect. 18 1
849 90.01 radiation 1.0 14400 < th dose dependent rect. 5 15
851 90.01 radiation 1.0 14400 < th dose dependent rect. 3 17
866 90.02 humidity 90.0 14400 > th dose independent sin 8 NA
889 90.03 radiation 1.0 14400 < th dose dependent rect. 21 13
902 90.04 radiation 1.0 14400 < th dose dependent rect. 23 11
914 90.05 humidity 90.0 43200 > th dose independent rect. 7 17
917 90.05 humidity 80.0 43200 > th dose dependent rect. 17 1
955 90.07 radiation 1.0 14400 < th dose independent sin 10 NA
1000 90.11 radiation 1.0 14400 < th dose independent rect. 7 23