Os04g0690400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0690400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.27 | 0.217 | 8.6 | 1.2 | 0.39 | -0.509 | -0.229 | 1.27 | 0.065 | 19.9 | 23 | 1293 | -- | -- |
| 22.86 | 0.223 | 8.65 | 0.845 | 0.381 | -0.367 | -0.214 | -- | -0.00891 | 19.4 | 21.83 | 7114 | -- | -- |
| 21.41 | 0.215 | 8.61 | 1.19 | 0.39 | -0.495 | -- | 1.19 | 0.0632 | 19.8 | 22.81 | 1310 | -- | -- |
| 22.25 | 0.22 | 8.65 | 0.836 | 0.401 | -0.408 | -- | -- | -0.0302 | 19.9 | 21.84 | 1195 | -- | -- |
| 29.46 | 0.253 | 8.6 | 1.16 | -- | -0.482 | -- | 1.1 | 0.0518 | -- | 22.84 | 1379 | -- | -- |
| 27.62 | 0.246 | 8.67 | 0.699 | 0.395 | -- | -0.145 | -- | -0.118 | 19.3 | -- | -- | -- | -- |
| 27.67 | 0.246 | 8.67 | 0.702 | 0.395 | -- | -- | -- | -0.118 | 19.2 | -- | -- | -- | -- |
| 30.27 | 0.256 | 8.64 | 0.839 | -- | -0.383 | -- | -- | -0.0443 | -- | 22.11 | 1380 | -- | -- |
| 39.29 | 0.292 | 8.67 | -- | 0.414 | -0.228 | -- | -- | -0.151 | 19.7 | 21.72 | 1142 | -- | -- |
| 35.94 | 0.28 | 8.66 | 0.695 | -- | -- | -- | -- | -0.125 | -- | -- | -- | -- | -- |
| 40.67 | 0.298 | 8.68 | -- | 0.388 | -- | -- | -- | -0.196 | 19.3 | -- | -- | -- | -- |
| 46.94 | 0.319 | 8.67 | -- | -- | -0.18 | -- | -- | -0.21 | -- | 33.8 | 2693 | -- | -- |
| 48.69 | 0.326 | 8.67 | -- | -- | -- | -- | -- | -0.202 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.03 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 2 |
| 3 | 21.05 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 6 |
| 42 | 21.21 | temperature | 25 | 1440 | > th | dose dependent | sin | 19 | NA |
| 227 | 21.47 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 341 | 21.66 | temperature | 10 | 1440 | > th | dose dependent | rect. | 12 | 2 |
| 353 | 21.67 | temperature | 10 | 1440 | > th | dose dependent | rect. | 12 | 7 |
| 453 | 21.77 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 7 |
| 483 | 21.80 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 520 | 21.83 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 7 |
| 702 | 21.98 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 5 |
| 750 | 22.01 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 6 |
| 770 | 22.02 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 788 | 22.04 | wind | 5 | 43200 | > th | dose independent | rect. | 8 | 8 |
| 826 | 22.07 | temperature | 10 | 1440 | > th | dose dependent | sin | 19 | NA |
| 866 | 22.09 | wind | 5 | 43200 | < th | dose independent | rect. | 8 | 8 |
| 920 | 22.12 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 17 |
| 936 | 22.14 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 956 | 22.15 | wind | 5 | 43200 | > th | dose dependent | rect. | 9 | 7 |
| 962 | 22.15 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 18 |