Os04g0690300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0690300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.2 | 0.177 | 11 | 0.293 | 0.555 | 0.372 | -0.124 | 0.983 | 0.407 | 1.2 | 21.4 | 1623 | -- | -- |
| 16.31 | 0.188 | 11 | 0.0617 | 0.556 | 0.298 | -0.0975 | -- | 0.346 | 1.03 | 21.8 | 1698 | -- | -- |
| 14.26 | 0.176 | 11 | 0.296 | 0.555 | 0.373 | -- | 0.981 | 0.407 | 1.2 | 21.4 | 1629 | -- | -- |
| 16.16 | 0.188 | 11 | 0.108 | 0.635 | 0.227 | -- | -- | 0.372 | 1.09 | 22 | 1695 | -- | -- |
| 32.22 | 0.264 | 11 | 0.246 | -- | 0.429 | -- | 0.845 | 0.383 | -- | 21.72 | 2444 | -- | -- |
| 19.01 | 0.204 | 11 | 0.164 | 0.553 | -- | -0.153 | -- | 0.436 | 1.2 | -- | -- | -- | -- |
| 19.11 | 0.205 | 11 | 0.169 | 0.553 | -- | -- | -- | 0.437 | 1.19 | -- | -- | -- | -- |
| 31.95 | 0.263 | 11 | 0.0473 | -- | 0.421 | -- | -- | 0.313 | -- | 24.5 | 2396 | -- | -- |
| 16.39 | 0.189 | 11 | -- | 0.548 | 0.294 | -- | -- | 0.339 | 1.22 | 22.03 | 1715 | -- | -- |
| 38.02 | 0.288 | 11 | 0.191 | -- | -- | -- | -- | 0.448 | -- | -- | -- | -- | -- |
| 19.86 | 0.208 | 11 | -- | 0.556 | -- | -- | -- | 0.418 | 1.2 | -- | -- | -- | -- |
| 31.73 | 0.262 | 11 | -- | -- | 0.481 | -- | -- | 0.299 | -- | 24.8 | 2441 | -- | -- |
| 38.98 | 0.291 | 11 | -- | -- | -- | -- | -- | 0.427 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.64 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 2 | 13.74 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 3 | 13.74 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 22 | 10 |
| 5 | 13.76 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 23 | 3 |
| 7 | 13.81 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 4 | 4 |
| 20 | 13.93 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 1 | 7 |
| 26 | 14.02 | wind | 1.0 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 38 | 14.10 | wind | 1.0 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 45 | 14.13 | wind | 1.0 | 14400 | > th | dose independent | rect. | 4 | 8 |
| 62 | 14.18 | wind | 1.0 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 63 | 14.18 | wind | 3.0 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 64 | 14.18 | wind | 1.0 | 14400 | > th | dose independent | rect. | 21 | 11 |
| 67 | 14.19 | wind | 1.0 | 14400 | < th | dose independent | rect. | 4 | 8 |
| 68 | 14.19 | wind | 3.0 | 14400 | < th | dose dependent | sin | 9 | NA |
| 72 | 14.20 | wind | 1.0 | 14400 | > th | dose independent | rect. | 21 | 14 |
| 73 | 14.20 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 113 | 14.28 | wind | 1.0 | 14400 | < th | dose independent | rect. | 1 | 8 |
| 118 | 14.29 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 8 |
| 124 | 14.30 | wind | 1.0 | 14400 | < th | dose independent | rect. | 21 | 11 |
| 151 | 14.33 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 11 |
| 154 | 14.33 | wind | 1.0 | 14400 | < th | dose independent | rect. | 21 | 14 |
| 158 | 14.34 | wind | 1.0 | 14400 | > th | dose independent | sin | 7 | NA |
| 189 | 14.36 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 191 | 14.36 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 11 | 1 |
| 196 | 14.37 | wind | 1.0 | 14400 | < th | dose independent | rect. | 1 | 11 |
| 216 | 14.39 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 225 | 14.40 | temperature | 25.0 | 270 | < th | dose dependent | sin | 14 | NA |
| 226 | 14.40 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 240 | 14.42 | wind | 1.0 | 14400 | < th | dose independent | sin | 8 | NA |
| 276 | 14.47 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 302 | 14.50 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 333 | 14.53 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 3 |
| 386 | 14.56 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 13 | 16 |
| 438 | 14.60 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 12 | 13 |
| 452 | 14.61 | humidity | 50.0 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 464 | 14.62 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 475 | 14.62 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 484 | 14.63 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 490 | 14.63 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 492 | 14.63 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 15 | 1 |
| 526 | 14.65 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 22 | 10 |
| 572 | 14.68 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 21 | 15 |
| 579 | 14.69 | humidity | 70.0 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 690 | 14.74 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 697 | 14.74 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 13 |
| 698 | 14.74 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 13 |
| 705 | 14.74 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 717 | 14.74 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 13 |
| 727 | 14.75 | temperature | 25.0 | 720 | < th | dose dependent | sin | 18 | NA |
| 737 | 14.76 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 756 | 14.76 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 13 |
| 796 | 14.78 | wind | 1.0 | 14400 | < th | dose independent | rect. | 1 | 2 |
| 853 | 14.80 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 4 | 19 |
| 856 | 14.81 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 3 |
| 866 | 14.81 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 3 |
| 892 | 14.82 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 3 |
| 901 | 14.82 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 912 | 14.82 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 2 | 21 |
| 918 | 14.83 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 9 | 2 |
| 919 | 14.83 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 6 | 7 |
| 928 | 14.83 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 23 | 14 |
| 937 | 14.83 | humidity | 60.0 | 14400 | < th | dose dependent | sin | 1 | NA |
| 957 | 14.84 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 7 | 6 |
| 976 | 14.84 | humidity | 60.0 | 14400 | < th | dose dependent | sin | 23 | NA |