Os04g0689900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Pathogenesis-related protein 5 precursor (PR-5).
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Os04g0689900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Pathogenesis-related protein 5 precursor (PR-5).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 355.75 | 0.886 | 3.13 | 1.69 | 0.332 | -1.15 | -1.53 | 15.7 | -0.245 | 7.86 | 30.69 | 3911 | -- | -- |
| 371.58 | 0.905 | 3.46 | -0.66 | 0.429 | 1.02 | -1.47 | -- | -0.499 | 6.53 | -12.77 | 47520 | -- | -- |
| 361.55 | 0.886 | 3.12 | 1.66 | 0.348 | -1.13 | -- | 15.8 | -0.235 | 9.35 | 30.7 | 3882 | -- | -- |
| 375.04 | 0.908 | 3.46 | -0.701 | 0.499 | 1.02 | -- | -- | -0.527 | 5.29 | 19.95 | 47520 | -- | -- |
| 368.56 | 0.894 | 3.13 | 1.72 | -- | -1.21 | -- | 16.1 | -0.241 | -- | 30.7 | 3911 | -- | -- |
| 383.99 | 0.919 | 3.42 | -0.448 | 0.339 | -- | -1.55 | -- | -0.355 | 7.75 | -- | -- | -- | -- |
| 390.57 | 0.925 | 3.42 | -0.485 | 0.34 | -- | -- | -- | -0.352 | 8.56 | -- | -- | -- | -- |
| 384.83 | 0.914 | 3.53 | -1.47 | -- | 0.912 | -- | -- | -0.79 | -- | 20 | 47520 | -- | -- |
| 387.04 | 0.921 | 3.44 | -- | 0.427 | 0.781 | -- | -- | -0.413 | 5.89 | 19.95 | 47520 | -- | -- |
| 397.08 | 0.931 | 3.43 | -0.484 | -- | -- | -- | -- | -0.349 | -- | -- | -- | -- | -- |
| 396.77 | 0.932 | 3.41 | -- | 0.339 | -- | -- | -- | -0.298 | 8.67 | -- | -- | -- | -- |
| 395.47 | 0.929 | 3.44 | -- | -- | 0.572 | -- | -- | -0.375 | -- | 19.95 | 47520 | -- | -- |
| 403.25 | 0.937 | 3.42 | -- | -- | -- | -- | -- | -0.295 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 350.13 | temperature | 30 | 1440 | < th | dose independent | rect. | 7 | 3 |
| 4 | 350.48 | temperature | 30 | 1440 | < th | dose independent | rect. | 19 | 15 |
| 9 | 350.79 | temperature | 30 | 1440 | < th | dose independent | rect. | 23 | 11 |
| 49 | 352.92 | temperature | 30 | 4320 | > th | dose independent | rect. | 9 | 1 |
| 50 | 352.92 | temperature | 30 | 1440 | > th | dose independent | rect. | 8 | 3 |
| 163 | 354.67 | temperature | 30 | 4320 | > th | dose dependent | rect. | 9 | 4 |
| 180 | 354.70 | temperature | 30 | 4320 | > th | dose dependent | rect. | 9 | 2 |
| 214 | 354.86 | temperature | 30 | 4320 | > th | dose independent | sin | 9 | NA |
| 248 | 354.99 | temperature | 30 | 4320 | < th | dose independent | sin | 9 | NA |
| 266 | 355.01 | temperature | 30 | 4320 | > th | dose dependent | sin | 8 | NA |
| 291 | 355.21 | temperature | 30 | 4320 | > th | dose independent | rect. | 16 | 20 |
| 517 | 357.43 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 547 | 357.62 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 564 | 357.66 | temperature | 30 | 4320 | > th | dose dependent | no | NA | NA |
| 729 | 357.86 | atmosphere | 1000 | 1440 | < th | dose independent | rect. | 20 | 14 |
| 758 | 358.04 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 21 | 2 |
| 759 | 358.04 | atmosphere | 1000 | 1440 | < th | dose independent | rect. | 21 | 2 |
| 764 | 358.10 | temperature | 30 | 4320 | < th | dose independent | rect. | 16 | 2 |
| 765 | 358.10 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 19 | 20 |
| 766 | 358.13 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 6 | 23 |
| 769 | 358.15 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 17 | 22 |
| 771 | 358.17 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 2 |
| 816 | 358.33 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 2 | 23 |
| 818 | 358.36 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 19 | 22 |
| 819 | 358.37 | temperature | 30 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 848 | 358.48 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 21 | 11 |
| 854 | 358.53 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 3 |
| 873 | 358.65 | temperature | 30 | 4320 | < th | dose independent | rect. | 16 | 9 |
| 876 | 358.67 | temperature | 25 | 4320 | > th | dose dependent | rect. | 22 | 3 |
| 904 | 358.74 | temperature | 30 | 4320 | < th | dose independent | rect. | 16 | 6 |
| 930 | 358.77 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 20 | 14 |
| 952 | 358.86 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 8 | 23 |
| 955 | 358.89 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 20 | 22 |
| 966 | 358.92 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 20 | 20 |