Os04g0689400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os04g0689400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 126.82 | 0.529 | 3.52 | -1.14 | 0.669 | -1.66 | -1.42 | 3.78 | 0.072 | 19.2 | 30 | 648 | -- | -- |
| 126.99 | 0.525 | 3.49 | -0.787 | 0.603 | -1.29 | -1.53 | -- | 0.0279 | 19.3 | 29.5 | 634 | -- | -- |
| 130.91 | 0.533 | 3.54 | -1.12 | 0.607 | -1.59 | -- | 3.65 | -0.0152 | 19.5 | 29.69 | 648 | -- | -- |
| 132.49 | 0.536 | 3.5 | -0.75 | 0.616 | -1.2 | -- | -- | -0.0175 | 19.5 | 29.43 | 646 | -- | -- |
| 142.84 | 0.557 | 3.55 | -1.35 | -- | -2.08 | -- | 4.67 | -0.138 | -- | 29.4 | 636 | -- | -- |
| 157.47 | 0.588 | 3.5 | -0.577 | 1.07 | -- | -0.867 | -- | 0.0267 | 19.2 | -- | -- | -- | -- |
| 159.46 | 0.591 | 3.5 | -0.559 | 1.07 | -- | -- | -- | 0.0246 | 19.2 | -- | -- | -- | -- |
| 144.62 | 0.56 | 3.51 | -0.839 | -- | -1.43 | -- | -- | -0.139 | -- | 28.5 | 587 | -- | -- |
| 146.64 | 0.564 | 3.48 | -- | 0.671 | -1.05 | -- | -- | 0.0703 | 19.4 | 29.47 | 636 | -- | -- |
| 220.07 | 0.693 | 3.48 | -0.579 | -- | -- | -- | -- | 0.00596 | -- | -- | -- | -- | -- |
| 167.71 | 0.606 | 3.49 | -- | 1.08 | -- | -- | -- | 0.0869 | 19.2 | -- | -- | -- | -- |
| 162.52 | 0.594 | 3.48 | -- | -- | -1.42 | -- | -- | -0.00599 | -- | 28.92 | 603 | -- | -- |
| 228.92 | 0.706 | 3.47 | -- | -- | -- | -- | -- | 0.0702 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 116.00 | temperature | 25 | 270 | > th | dose dependent | rect. | 15 | 11 |
| 3 | 116.03 | temperature | 25 | 270 | > th | dose dependent | rect. | 15 | 14 |
| 20 | 117.39 | temperature | 20 | 270 | > th | dose dependent | rect. | 15 | 4 |
| 28 | 118.11 | temperature | 25 | 270 | > th | dose independent | rect. | 14 | 6 |
| 34 | 118.89 | temperature | 25 | 270 | > th | dose dependent | sin | 14 | NA |
| 35 | 118.98 | temperature | 25 | 270 | > th | dose independent | rect. | 15 | 4 |
| 108 | 123.47 | temperature | 30 | 720 | < th | dose independent | rect. | 10 | 21 |
| 131 | 124.22 | temperature | 30 | 720 | < th | dose independent | rect. | 3 | 19 |
| 140 | 124.46 | temperature | 30 | 720 | < th | dose independent | rect. | 10 | 14 |
| 145 | 124.54 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 11 |
| 156 | 124.82 | radiation | 1 | 270 | > th | dose independent | rect. | 15 | 4 |
| 173 | 125.04 | temperature | 30 | 720 | < th | dose independent | rect. | 18 | 21 |
| 200 | 125.44 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 6 |
| 203 | 125.47 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 4 |
| 209 | 125.60 | humidity | 90 | 270 | < th | dose dependent | rect. | 15 | 4 |
| 210 | 125.65 | temperature | 30 | 720 | < th | dose independent | rect. | 10 | 6 |
| 239 | 126.06 | temperature | 25 | 10 | > th | dose independent | rect. | 16 | 6 |
| 256 | 126.25 | radiation | 1 | 270 | > th | dose independent | rect. | 17 | 12 |
| 257 | 126.26 | radiation | 1 | 270 | > th | dose independent | rect. | 17 | 2 |
| 277 | 126.37 | humidity | 70 | 270 | < th | dose independent | rect. | 15 | 4 |
| 290 | 126.50 | radiation | 1 | 270 | > th | dose dependent | rect. | 15 | 3 |
| 324 | 126.75 | temperature | 30 | 720 | < th | dose independent | rect. | 2 | 14 |
| 372 | 127.13 | temperature | 30 | 720 | > th | dose independent | rect. | 13 | 22 |
| 377 | 127.15 | humidity | 90 | 90 | < th | dose dependent | rect. | 17 | 2 |
| 380 | 127.16 | temperature | 30 | 720 | < th | dose independent | sin | 21 | NA |
| 382 | 127.17 | temperature | 30 | 720 | > th | dose independent | sin | 20 | NA |
| 404 | 127.31 | temperature | 30 | 720 | > th | dose independent | rect. | 10 | 9 |
| 449 | 127.40 | temperature | 30 | 720 | > th | dose independent | rect. | 11 | 7 |
| 457 | 127.42 | temperature | 25 | 270 | > th | dose independent | rect. | 14 | 12 |
| 478 | 127.50 | temperature | 30 | 720 | < th | dose independent | no | NA | NA |
| 484 | 127.56 | temperature | 30 | 720 | > th | dose independent | no | NA | NA |
| 585 | 127.61 | temperature | 25 | 270 | > th | dose independent | rect. | 14 | 15 |
| 589 | 127.63 | radiation | 20 | 270 | > th | dose independent | rect. | 16 | 15 |
| 618 | 127.74 | humidity | 70 | 270 | > th | dose independent | sin | 13 | NA |
| 622 | 127.76 | humidity | 70 | 270 | < th | dose independent | rect. | 15 | 17 |
| 651 | 127.80 | temperature | 30 | 720 | < th | dose independent | rect. | 23 | 23 |
| 656 | 127.83 | temperature | 25 | 720 | > th | dose dependent | rect. | 24 | 19 |
| 670 | 127.93 | radiation | 20 | 270 | > th | dose independent | rect. | 16 | 1 |
| 691 | 127.96 | radiation | 1 | 270 | > th | dose independent | sin | 14 | NA |
| 692 | 127.97 | temperature | 30 | 720 | > th | dose independent | rect. | 17 | 23 |
| 697 | 127.99 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 13 |
| 701 | 128.01 | radiation | 1 | 270 | < th | dose independent | sin | 14 | NA |
| 709 | 128.06 | temperature | 25 | 720 | > th | dose dependent | sin | 21 | NA |
| 736 | 128.19 | radiation | 20 | 270 | > th | dose dependent | rect. | 15 | 17 |
| 822 | 128.40 | radiation | 1 | 270 | < th | dose dependent | sin | 15 | NA |
| 829 | 128.45 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 11 |
| 998 | 128.90 | humidity | 80 | 90 | < th | dose independent | rect. | 17 | 2 |