Os04g0689000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Peroxidase (EC 1.11.1.7).
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Os04g0689000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Peroxidase (EC 1.11.1.7).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 127.02 | 0.53 | 3.01 | -0.0816 | 0.116 | 0.992 | -0.239 | 0.863 | 0.0491 | 7.5 | 9.081 | 9 | -- | -- |
| 124.85 | 0.52 | 3 | -0.0314 | 0.102 | 0.98 | -0.184 | -- | 0.0631 | 7.2 | 9.5 | 6 | -- | -- |
| 126.13 | 0.523 | 3.01 | -0.0808 | 0.118 | 1.21 | -- | 1.17 | 0.0533 | 7.77 | 9.2 | 6 | -- | -- |
| 124.67 | 0.52 | 3 | -0.0983 | 0.111 | 0.819 | -- | -- | 0.0542 | 8.4 | 9.472 | 6 | -- | -- |
| 125.27 | 0.521 | 3.01 | -0.12 | -- | 1.03 | -- | 0.656 | 0.065 | -- | 9.5 | 6 | -- | -- |
| 130.82 | 0.536 | 3.01 | -0.167 | 0.127 | -- | 0.00296 | -- | 0.0216 | 10 | -- | -- | -- | -- |
| 130.82 | 0.536 | 3.01 | -0.167 | 0.127 | -- | -- | -- | 0.0216 | 10 | -- | -- | -- | -- |
| 125.33 | 0.521 | 3.01 | -0.0973 | -- | 0.824 | -- | -- | 0.0524 | -- | 9.449 | 6 | -- | -- |
| 124.91 | 0.521 | 3 | -- | 0.11 | 0.839 | -- | -- | 0.0625 | 8.32 | 9.451 | 6 | -- | -- |
| 131.8 | 0.536 | 3.01 | -0.168 | -- | -- | -- | -- | 0.0215 | -- | -- | -- | -- | -- |
| 131.56 | 0.537 | 3.01 | -- | 0.128 | -- | -- | -- | 0.0401 | 10.1 | -- | -- | -- | -- |
| 125.58 | 0.522 | 3 | -- | -- | 0.847 | -- | -- | 0.0638 | -- | 9.448 | 6 | -- | -- |
| 132.55 | 0.537 | 3.01 | -- | -- | -- | -- | -- | 0.0402 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 118.57 | humidity | 80.0 | 10 | < th | dose independent | rect. | 5 | 1 |
| 24 | 118.57 | humidity | 80.0 | 10 | < th | dose dependent | rect. | 5 | 1 |
| 56 | 120.23 | radiation | 1.0 | 90 | > th | dose independent | rect. | 4 | 1 |
| 66 | 120.23 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 76 | 120.89 | humidity | 80.0 | 270 | < th | dose independent | rect. | 1 | 1 |
| 78 | 120.89 | humidity | 80.0 | 270 | < th | dose dependent | rect. | 1 | 1 |
| 87 | 121.77 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 5 | 1 |
| 101 | 121.94 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 103 | 122.26 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 127 | 122.91 | humidity | 80.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 157 | 123.20 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 198 | 123.71 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 4 | 7 |
| 215 | 124.44 | wind | 7.0 | 10 | > th | dose dependent | rect. | 12 | 2 |
| 217 | 124.45 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 1 | 5 |
| 223 | 124.62 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 1 | 10 |
| 224 | 124.64 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 21 | 1 |
| 266 | 125.03 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 24 | 6 |
| 270 | 125.08 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 4 | 2 |
| 284 | 125.18 | temperature | 30.0 | 10 | > th | dose dependent | rect. | 11 | 1 |
| 294 | 125.26 | wind | 7.0 | 30 | > th | dose independent | rect. | 12 | 3 |
| 301 | 125.39 | temperature | 20.0 | 10 | < th | dose independent | rect. | 5 | 3 |
| 303 | 125.40 | temperature | 30.0 | 10 | > th | dose independent | rect. | 11 | 1 |
| 325 | 125.45 | temperature | 20.0 | 10 | < th | dose independent | rect. | 5 | 1 |
| 335 | 125.48 | radiation | 1.0 | 10 | < th | dose independent | rect. | 5 | 1 |
| 339 | 125.50 | temperature | 30.0 | 90 | > th | dose independent | rect. | 11 | 1 |
| 378 | 125.60 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 20 | 7 |
| 382 | 125.61 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 1 | 5 |
| 464 | 125.79 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 6 | 1 |
| 526 | 125.91 | wind | 7.0 | 10 | < th | dose independent | rect. | 3 | 23 |
| 551 | 125.98 | temperature | 20.0 | 10 | > th | dose independent | rect. | 3 | 10 |
| 586 | 126.12 | temperature | 30.0 | 10 | > th | dose dependent | sin | 8 | NA |
| 618 | 126.29 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 1 | 7 |
| 659 | 126.42 | radiation | 20.0 | 10 | < th | dose independent | rect. | 12 | 1 |
| 680 | 126.50 | temperature | 20.0 | 10 | > th | dose independent | rect. | 23 | 14 |
| 682 | 126.51 | temperature | 20.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 696 | 126.57 | temperature | 20.0 | 10 | < th | dose independent | rect. | 24 | 12 |
| 724 | 126.61 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 5 | 1 |
| 729 | 126.62 | wind | 7.0 | 10 | < th | dose independent | rect. | 6 | 23 |
| 736 | 126.63 | wind | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 752 | 126.66 | humidity | 80.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 753 | 126.66 | humidity | 80.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 756 | 126.67 | temperature | 20.0 | 30 | < th | dose independent | rect. | 24 | 7 |
| 757 | 126.67 | wind | 3.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 776 | 126.70 | wind | 5.0 | 10 | > th | dose dependent | sin | 1 | NA |
| 787 | 126.73 | temperature | 20.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 792 | 126.74 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 794 | 126.74 | radiation | 40.0 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 831 | 126.76 | temperature | 20.0 | 10 | < th | dose independent | rect. | 5 | 7 |
| 846 | 126.78 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 861 | 126.82 | wind | 5.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 864 | 126.82 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 866 | 126.82 | temperature | 25.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 868 | 126.82 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 871 | 126.82 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 872 | 126.82 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 874 | 126.82 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 879 | 126.82 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 884 | 126.82 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 885 | 126.82 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 887 | 126.82 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 892 | 126.82 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 934 | 126.86 | temperature | 20.0 | 90 | < th | dose dependent | sin | 5 | NA |
| 939 | 126.87 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |