Os04g0688600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peroxidase (EC 1.11.1.7).
FiT-DB / Search/ Help/ Sample detail
|
Os04g0688600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Peroxidase (EC 1.11.1.7).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 152.54 | 0.58 | 2.26 | 3.56 | 0.136 | -43.2 | -0.403 | 263 | -0.082 | 6.3 | 994.8 | 737 | -- | -- |
| 162.17 | 0.598 | 2.85 | 0.0722 | 0.164 | -0.101 | -0.304 | -- | -0.0912 | 6.05 | 994.8 | 737 | -- | -- |
| 152.94 | 0.576 | 2.26 | 3.55 | 0.134 | -43.2 | -- | 263 | -0.0805 | 6.54 | 994.8 | 734 | -- | -- |
| 159.97 | 0.589 | 2.85 | 0.0149 | 0.131 | 0.606 | -- | -- | -0.0827 | 6.25 | 994.5 | 714 | -- | -- |
| 153.87 | 0.578 | 2.26 | 3.58 | -- | -43.5 | -- | 265 | -0.0781 | -- | 994.8 | 739 | -- | -- |
| 162.18 | 0.597 | 2.85 | 0.0716 | 0.165 | -- | -0.301 | -- | -0.091 | 6.04 | -- | -- | -- | -- |
| 162.4 | 0.597 | 2.85 | 0.0686 | 0.163 | -- | -- | -- | -0.09 | 5.9 | -- | -- | -- | -- |
| 161.37 | 0.592 | 2.85 | 0.0527 | -- | 0.641 | -- | -- | -0.0779 | -- | 994.5 | 824 | -- | -- |
| 159.89 | 0.589 | 2.85 | -- | 0.172 | 0.671 | -- | -- | -0.0865 | 6.38 | 994.5 | 821 | -- | -- |
| 163.78 | 0.598 | 2.85 | 0.0735 | -- | -- | -- | -- | -0.0862 | -- | -- | -- | -- | -- |
| 162.52 | 0.596 | 2.85 | -- | 0.164 | -- | -- | -- | -0.0976 | 5.88 | -- | -- | -- | -- |
| 161.44 | 0.592 | 2.85 | -- | -- | 0.649 | -- | -- | -0.0778 | -- | 994.5 | 824 | -- | -- |
| 163.92 | 0.598 | 2.85 | -- | -- | -- | -- | -- | -0.0943 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 136.78 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 1 | 9 |
| 14 | 137.83 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 24 | 7 |
| 23 | 138.56 | atmosphere | 1000.0 | 30 | < th | dose dependent | rect. | 1 | 10 |
| 47 | 140.52 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 8 | 1 |
| 48 | 140.52 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 9 | 1 |
| 63 | 140.84 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 6 | 1 |
| 90 | 141.85 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 9 | 1 |
| 122 | 143.09 | atmosphere | 1000.0 | 270 | < th | dose dependent | rect. | 6 | 1 |
| 136 | 144.03 | atmosphere | 1000.0 | 720 | < th | dose dependent | rect. | 22 | 4 |
| 186 | 146.13 | atmosphere | 1000.0 | 720 | < th | dose independent | rect. | 23 | 3 |
| 199 | 146.40 | wind | 5.0 | 90 | > th | dose independent | rect. | 6 | 1 |
| 200 | 146.40 | wind | 5.0 | 90 | > th | dose dependent | rect. | 6 | 1 |
| 232 | 147.50 | wind | 5.0 | 10 | > th | dose independent | rect. | 7 | 1 |
| 259 | 148.24 | atmosphere | 1000.0 | 720 | < th | dose dependent | rect. | 1 | 1 |
| 301 | 148.99 | atmosphere | 1000.0 | 720 | < th | dose independent | rect. | 1 | 1 |
| 336 | 149.75 | atmosphere | 1000.0 | 270 | < th | dose independent | sin | 7 | NA |
| 351 | 149.94 | atmosphere | 1000.0 | 270 | > th | dose independent | sin | 7 | NA |
| 360 | 150.01 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 2 | 2 |
| 362 | 150.04 | atmosphere | 1000.0 | 720 | < th | dose dependent | sin | 11 | NA |
| 369 | 150.24 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 2 | 2 |
| 370 | 150.26 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 2 | 2 |
| 381 | 150.39 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 7 | 1 |
| 387 | 150.39 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 7 | 1 |
| 401 | 150.46 | radiation | 10.0 | 90 | < th | dose independent | rect. | 7 | 1 |
| 408 | 150.50 | temperature | 25.0 | 10 | > th | dose independent | rect. | 2 | 2 |
| 431 | 150.62 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 2 | 1 |
| 436 | 150.64 | atmosphere | 1000.0 | 270 | < th | dose dependent | sin | 8 | NA |
| 439 | 150.70 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 2 | 1 |
| 499 | 151.19 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 16 | 19 |
| 525 | 151.45 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 18 | 17 |
| 555 | 151.61 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 8 | 1 |
| 574 | 151.79 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 7 | 1 |
| 586 | 151.86 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 8 | 1 |
| 595 | 151.93 | wind | 1.0 | 30 | < th | dose dependent | rect. | 5 | 1 |
| 638 | 152.41 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 17 | 17 |
| 653 | 152.49 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 16 | 19 |
| 660 | 152.54 | atmosphere | 995.0 | 720 | < th | dose independent | rect. | 16 | 1 |
| 664 | 152.54 | atmosphere | 995.0 | 720 | < th | dose dependent | rect. | 16 | 1 |
| 675 | 152.57 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 20 | 9 |
| 755 | 152.79 | atmosphere | 1000.0 | 10 | > th | dose independent | sin | 6 | NA |
| 783 | 152.82 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 19 | 16 |
| 786 | 152.83 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 24 | 3 |
| 792 | 152.85 | wind | 1.0 | 30 | < th | dose dependent | rect. | 4 | 4 |
| 825 | 152.98 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 7 | 1 |
| 838 | 153.06 | wind | 1.0 | 30 | < th | dose independent | rect. | 5 | 1 |
| 919 | 153.29 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 10 | 1 |
| 940 | 153.44 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 18 | 14 |