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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0688500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peroxidase (EC 1.11.1.7).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3 (0.042) R2 : 0.0135
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.221 (0.0884) R2dN8 : 0.0175 R2N8 : 0.0135
σ : 0.791
deviance : 287.05
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
268.43 0.77 3 0.11 0.0572 3.01 -0.193 -5.18 -0.153 7.62 49 109 -- --
272.75 0.769 2.95 0.181 0.0406 1.82 0.253 -- -0.115 7.69 48.39 121 -- --
268.48 0.763 3 0.101 0.0683 3.05 -- -5.24 -0.153 5.87 48.96 109 -- --
271.59 0.768 2.98 0.181 0.0388 1.68 -- -- -0.159 5.86 48.14 120 -- --
268.7 0.763 3.01 0.11 -- 2.96 -- -5.05 -0.152 -- 48.91 109 -- --
283.91 0.79 2.99 0.302 0.0743 -- 0.467 -- -0.188 18.1 -- -- -- --
284.4 0.79 2.99 0.298 0.0811 -- -- -- -0.186 16.8 -- -- -- --
271.67 0.768 2.98 0.185 -- 1.65 -- -- -0.159 -- 48.19 120 -- --
272.43 0.769 2.99 -- 0.0498 1.75 -- -- -0.178 5.14 48.01 120 -- --
284.75 0.788 2.99 0.295 -- -- -- -- -0.188 -- -- -- -- --
286.75 0.792 3 -- 0.0757 -- -- -- -0.219 16.9 -- -- -- --
272.55 0.769 2.99 -- -- 1.72 -- -- -0.178 -- 48.18 120 -- --
287.05 0.791 3 -- -- -- -- -- -0.221 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 259.74 humidity 60.0 10 < th dose independent rect. 17 1
2 259.76 temperature 25.0 10 > th dose dependent rect. 17 1
3 260.46 temperature 25.0 90 < th dose dependent rect. 1 2
4 260.76 radiation 1.0 10 > th dose independent rect. 17 1
8 261.42 temperature 30.0 10 > th dose independent rect. 17 1
9 261.71 temperature 20.0 10 < th dose independent rect. 2 1
12 262.06 wind 7.0 4320 < th dose independent rect. 24 1
13 262.45 radiation 1.0 10 < th dose dependent rect. 5 20
14 262.54 humidity 60.0 30 < th dose dependent rect. 17 1
16 262.60 wind 7.0 4320 < th dose independent rect. 23 3
17 262.74 humidity 50.0 1440 < th dose dependent rect. 11 3
38 262.84 radiation 1.0 10 < th dose dependent rect. 11 14
43 262.87 radiation 1.0 10 < th dose dependent rect. 13 12
45 262.89 atmosphere 1005.0 10 < th dose independent rect. 17 1
47 262.91 radiation 1.0 10 < th dose dependent rect. 15 10
50 263.11 humidity 80.0 10 < th dose dependent rect. 17 1
53 263.24 radiation 1.0 30 < th dose independent rect. 11 14
57 263.26 radiation 1.0 30 < th dose independent rect. 13 12
59 263.30 radiation 1.0 30 < th dose independent rect. 15 10
62 263.34 temperature 30.0 90 < th dose dependent rect. 24 9
68 263.62 radiation 1.0 30 < th dose independent rect. 4 21
80 263.78 temperature 20.0 10 < th dose independent rect. 1 3
87 263.85 humidity 90.0 10 < th dose dependent rect. 15 3
103 264.27 wind 5.0 4320 > th dose dependent rect. 24 1
125 264.33 temperature 25.0 90 < th dose dependent rect. 24 5
128 264.36 wind 7.0 4320 > th dose independent rect. 23 3
139 264.57 wind 5.0 4320 > th dose independent rect. 24 1
145 264.64 humidity 70.0 90 < th dose independent rect. 15 3
151 264.71 humidity 80.0 10 < th dose independent rect. 15 3
197 264.96 atmosphere 1000.0 10 < th dose dependent rect. 17 5
201 265.04 atmosphere 1000.0 90 < th dose dependent rect. 17 5
252 265.49 wind 1.0 720 < th dose dependent rect. 21 1
263 265.66 radiation 1.0 30 < th dose independent rect. 2 23
307 265.94 temperature 30.0 270 < th dose dependent rect. 22 9
356 266.24 atmosphere 1000.0 90 < th dose independent rect. 17 4
360 266.26 wind 1.0 10 < th dose dependent rect. 1 3
370 266.43 humidity 50.0 1440 < th dose independent rect. 11 3
390 266.49 wind 1.0 10 < th dose independent rect. 1 1
419 266.72 radiation 1.0 10 < th dose dependent rect. 2 23
431 266.78 wind 1.0 90 < th dose dependent rect. 24 1
448 266.89 atmosphere 1005.0 10 < th dose independent rect. 14 5
450 267.05 radiation 1.0 30 > th dose independent sin 15 NA
453 267.07 radiation 1.0 30 < th dose independent sin 15 NA
455 267.07 atmosphere 1005.0 30 < th dose dependent rect. 24 2
466 267.09 atmosphere 1000.0 10 < th dose dependent rect. 17 1
529 267.24 humidity 50.0 90 > th dose independent rect. 2 23
542 267.27 humidity 50.0 90 > th dose independent rect. 11 13
543 267.27 humidity 50.0 90 > th dose independent rect. 9 15
547 267.32 humidity 50.0 4320 < th dose dependent rect. 15 1
552 267.38 atmosphere 995.0 10 > th dose independent rect. 1 17
557 267.45 radiation 10.0 90 < th dose dependent sin 14 NA
561 267.47 wind 3.0 270 > th dose independent rect. 13 2
574 267.58 radiation 1.0 30 > th dose dependent rect. 17 1
628 267.81 precipitation 0.1 10 < th dose independent rect. 1 17
629 267.81 precipitation 0.1 10 < th dose dependent rect. 1 17
646 267.90 humidity 50.0 90 < th dose dependent rect. 12 6
672 267.97 wind 3.0 270 > th dose dependent rect. 12 3
712 268.11 radiation 1.0 10 < th dose dependent sin 15 NA
715 268.12 wind 9.0 10 < th dose independent rect. 1 17
780 268.25 humidity 70.0 90 > th dose independent rect. 9 15
787 268.31 precipitation 0.1 10 < th dose independent rect. 18 7
789 268.31 precipitation 0.1 10 < th dose dependent rect. 18 7
796 268.37 humidity 50.0 90 < th dose dependent sin 13 NA
804 268.43 wind 1.0 10 < th dose independent rect. 8 1
806 268.43 wind 1.0 10 < th dose dependent rect. 8 1
808 268.44 wind 1.0 90 < th dose independent rect. 24 1
832 268.52 humidity 70.0 270 < th dose independent rect. 13 2
834 268.52 temperature 25.0 30 < th dose dependent rect. 1 16
841 268.57 temperature 10.0 10 > th dose independent rect. 18 7
842 268.57 humidity 50.0 10 > th dose independent rect. 18 7
847 268.57 temperature 10.0 10 > th dose independent rect. 1 17
849 268.57 atmosphere 1015.0 10 < th dose independent rect. 1 17
850 268.57 radiation 40.0 10 < th dose dependent rect. 18 7
857 268.61 wind 1.0 720 < th dose independent rect. 21 1
858 268.62 wind 9.0 10 < th dose independent rect. 18 7
868 268.69 humidity 50.0 90 < th dose independent rect. 12 6
870 268.69 atmosphere 995.0 10 > th dose independent rect. 18 7
907 268.71 temperature 10.0 1440 > th dose independent rect. 17 1
911 268.71 radiation 30.0 1440 < th dose independent rect. 17 1
917 268.71 temperature 10.0 1440 > th dose independent rect. 18 23
922 268.74 humidity 50.0 90 < th dose independent sin 13 NA
933 268.81 humidity 90.0 30 > th dose dependent rect. 1 1
942 268.86 humidity 50.0 4320 < th dose independent rect. 15 1
948 268.89 humidity 70.0 90 > th dose independent rect. 11 13
973 268.97 humidity 50.0 4320 < th dose dependent rect. 15 20
997 269.14 humidity 50.0 90 > th dose independent sin 13 NA