Os04g0688300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Haem peroxidase, plant/fungal/bacterial family protein.
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Os04g0688300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Haem peroxidase, plant/fungal/bacterial family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 385.62 | 0.923 | 7.98 | -0.995 | 2.84 | -2.84 | 2.43 | 0.608 | -0.326 | 20 | 1.003 | 1446 | -- | -- |
| 385.16 | 0.914 | 7.98 | -0.993 | 2.86 | -2.99 | 2.32 | -- | -0.31 | 20.1 | 0.8396 | 1445 | -- | -- |
| 403.24 | 0.935 | 7.98 | -1.07 | 2.84 | -2.79 | -- | 0.538 | -0.351 | 20.1 | 1.01 | 1445 | -- | -- |
| 402.64 | 0.935 | 7.98 | -1.09 | 2.86 | -2.96 | -- | -- | -0.301 | 20.1 | 0.84 | 1445 | -- | -- |
| 786.41 | 1.31 | 7.99 | -1.72 | -- | -1.29 | -- | -0.313 | -0.71 | -- | 1.01 | 1445 | -- | -- |
| 493.78 | 1.04 | 8.07 | -1.65 | 2.91 | -- | 2.29 | -- | -0.699 | 20.1 | -- | -- | -- | -- |
| 509.38 | 1.06 | 8.07 | -1.71 | 2.91 | -- | -- | -- | -0.698 | 20.2 | -- | -- | -- | -- |
| 787.05 | 1.31 | 7.99 | -1.72 | -- | -1.3 | -- | -- | -0.709 | -- | 1.01 | 1445 | -- | -- |
| 428.64 | 0.964 | 7.98 | -- | 2.82 | -3.41 | -- | -- | -0.154 | 19.9 | 0.5994 | 1452 | -- | -- |
| 974.74 | 1.46 | 8 | -1.74 | -- | -- | -- | -- | -0.733 | -- | -- | -- | -- | -- |
| 586.75 | 1.13 | 8.03 | -- | 2.92 | -- | -- | -- | -0.507 | 20.1 | -- | -- | -- | -- |
| 813.87 | 1.33 | 7.81 | -- | -- | -3.95 | -- | -- | -0.189 | -- | 1.04 | 1500 | -- | -- |
| 1054.33 | 1.52 | 7.95 | -- | -- | -- | -- | -- | -0.54 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 376.55 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 4 | 377.35 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 25 | 381.14 | wind | 7.0 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 26 | 381.56 | wind | 7.0 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 29 | 382.39 | radiation | 1.0 | 1440 | > th | dose independent | sin | 22 | NA |
| 33 | 383.10 | radiation | 1.0 | 1440 | < th | dose independent | sin | 22 | NA |
| 39 | 383.75 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 21 |
| 51 | 384.40 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 10 | 9 |
| 91 | 384.82 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 23 | NA |
| 92 | 384.86 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 20 | 20 |
| 111 | 385.43 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 10 | 11 |
| 121 | 385.57 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 2 | 19 |
| 125 | 385.62 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 4 | 17 |
| 130 | 385.65 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 10 | 14 |
| 175 | 385.83 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 12 |
| 176 | 385.84 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 5 | 14 |
| 186 | 385.85 | radiation | 1.0 | 1440 | > th | dose independent | sin | 15 | NA |
| 189 | 385.88 | radiation | 1.0 | 1440 | > th | dose independent | no | NA | NA |
| 274 | 386.08 | radiation | 1.0 | 1440 | < th | dose independent | no | NA | NA |
| 282 | 386.10 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 15 |
| 337 | 386.61 | radiation | 1.0 | 1440 | < th | dose independent | sin | 15 | NA |
| 382 | 386.92 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 20 | 19 |
| 427 | 387.86 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 2 | 16 |
| 428 | 387.91 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 4 | 14 |
| 444 | 388.35 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 19 | 23 |
| 446 | 388.36 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 23 | 19 |
| 469 | 389.11 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 480 | 389.19 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 17 | 23 |
| 485 | 389.50 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 2 | 19 |
| 488 | 389.55 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 4 | 17 |
| 561 | 390.12 | radiation | 1.0 | 1440 | < th | dose dependent | no | NA | NA |
| 599 | 390.57 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 654 | 391.76 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 796 | 396.69 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 806 | 397.10 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 15 | 3 |
| 823 | 397.81 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 14 | 5 |
| 840 | 398.79 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 8 | 16 |
| 852 | 399.09 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 23 | 10 |
| 864 | 399.60 | wind | 7.0 | 43200 | > th | dose independent | rect. | 13 | 9 |
| 901 | 401.16 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 1 | 3 |
| 906 | 401.31 | wind | 7.0 | 43200 | < th | dose independent | rect. | 13 | 9 |
| 919 | 401.71 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 1 | 3 |
| 958 | 402.23 | temperature | 20.0 | 10 | > th | dose dependent | sin | 5 | NA |
| 967 | 402.40 | temperature | 10.0 | 10 | > th | dose dependent | sin | 5 | NA |
| 969 | 402.46 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 7 | 7 |
| 999 | 403.12 | wind | 7.0 | 43200 | < th | dose independent | rect. | 13 | 5 |