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Os04g0688100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peroxidase (EC 1.11.1.7).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.87 (0.0708) R2 : 0.401
β1 : -2.86 (0.278) R2dD : 0.168 R2D : 0.0487
β2 : 0.196 (0.195) R2dC : 0.00164 R2C : -0.0174
β3 : 3.68 (0.286) R2dE : 0.286 R2E : 0.242
β4 : 5.59 (0.937) R2dD*C : 0.0773 R2D*C : -0.0362
β5 : 4.68 (1.04) R2dD*E : 0.0478 R2D*E : -0.0329
γ1 : -0.28 (0.155) R2dN8 : 0.00609 R2N8 : 0.00752
σ : 1.33
deviance : 800.91
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_____
C
peak time of C : 15.1
E
wheather : humidity
threshold : 83.65
memory length : 712
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 19.6
open length of G : 3.5

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
800.91 1.33 9.87 -2.86 0.196 3.68 5.59 4.68 -0.28 15.1 83.65 712 19.6 3.5
835.08 1.35 9.89 -2.44 0.107 3.84 3.05 -- -0.206 15 84.43 720 19.5 3.47
864.33 1.37 9.81 -2.5 0.244 3.88 -- 1.89 -0.109 9.89 84.77 712 19.4 3.69
859.06 1.37 9.85 -2.32 0.258 3.78 -- -- -0.137 9.25 85.25 715 19.6 3.17
861.57 1.37 9.85 -2.4 -- 3.86 -- 1.04 -0.128 -- 85.65 726 19.6 3.25
1147.94 1.59 9.96 -2.12 1 -- -2.12 -- -0.633 3.82 -- -- -- --
1161.23 1.6 9.96 -2.09 0.991 -- -- -- -0.621 3.77 -- -- -- --
862.4 1.37 9.86 -2.28 -- 3.74 -- -- -0.136 -- 85.44 720 19.7 3.13
997.61 1.47 9.81 -- 0.25 3.87 -- -- 0.0618 8.48 87.01 714 19.7 3.15
1215.43 1.63 9.96 -2.05 -- -- -- -- -0.594 -- -- -- -- --
1276.17 1.67 9.91 -- 0.95 -- -- -- -0.388 3.79 -- -- -- --
1000.32 1.47 9.81 -- -- 3.75 -- -- 0.0817 -- 87.02 720 19.7 3.08
1325.98 1.7 9.91 -- -- -- -- -- -0.367 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 809.44 humidity 80 720 > th dose dependent rect. 19 4
6 819.52 humidity 60 720 > th dose dependent rect. 17 8
22 826.07 humidity 90 720 < th dose dependent rect. 18 6
63 838.23 humidity 90 720 < th dose dependent rect. 17 16
69 840.34 humidity 90 720 < th dose independent rect. 17 7
77 843.00 humidity 70 1440 < th dose independent rect. 17 22
91 846.25 humidity 70 1440 > th dose independent rect. 18 21
112 850.83 humidity 90 720 > th dose independent rect. 20 3
113 851.17 humidity 60 720 > th dose dependent sin 15 NA
118 852.44 humidity 80 720 > th dose dependent rect. 10 15
124 853.25 humidity 80 720 > th dose dependent sin 17 NA
177 859.56 humidity 70 1440 < th dose independent rect. 9 23
183 860.17 humidity 70 1440 < th dose independent no NA NA
184 860.17 humidity 70 1440 < th dose independent rect. 6 14
254 860.75 humidity 90 720 > th dose independent rect. 17 7
256 860.86 humidity 70 1440 < th dose independent rect. 11 23
258 860.92 humidity 70 1440 < th dose independent rect. 9 11
288 861.33 humidity 80 720 > th dose dependent rect. 5 18
299 862.58 humidity 90 720 < th dose dependent sin 12 NA
308 863.35 humidity 70 1440 < th dose independent rect. 13 23
333 864.86 humidity 70 1440 > th dose independent rect. 2 22
334 864.87 humidity 70 1440 > th dose independent rect. 6 18
335 864.89 humidity 70 1440 > th dose independent rect. 4 20
336 864.89 humidity 70 1440 > th dose independent rect. 9 23
339 864.91 humidity 70 1440 > th dose independent rect. 2 18
341 864.92 humidity 70 1440 > th dose independent rect. 6 14
344 864.94 humidity 70 1440 > th dose independent rect. 4 16
357 864.97 humidity 70 1440 > th dose independent rect. 6 21
360 864.98 humidity 70 1440 > th dose independent rect. 6 23
363 864.99 humidity 70 1440 > th dose independent rect. 4 23
374 865.03 humidity 70 1440 > th dose independent rect. 22 22
376 865.04 humidity 70 1440 < th dose independent sin 21 NA
379 865.05 humidity 70 1440 > th dose independent no NA NA
410 865.29 humidity 90 1440 < th dose dependent rect. 11 22
425 866.12 humidity 90 1440 < th dose dependent rect. 3 18
440 866.30 humidity 90 1440 < th dose dependent rect. 3 21
450 866.43 humidity 70 1440 > th dose independent rect. 11 23
463 866.68 humidity 90 1440 < th dose dependent rect. 13 20
472 867.16 humidity 50 1440 > th dose dependent rect. 3 18
479 867.30 humidity 50 1440 > th dose dependent rect. 3 21
512 868.00 radiation 10 1440 < th dose dependent rect. 9 22
537 868.48 humidity 90 1440 < th dose dependent rect. 23 22
560 869.02 humidity 80 1440 < th dose dependent rect. 17 22
564 869.15 humidity 50 1440 > th dose dependent rect. 11 22
583 869.55 humidity 90 1440 < th dose dependent no NA NA
585 869.59 humidity 90 720 > th dose independent rect. 9 15
625 870.61 humidity 90 720 > th dose independent rect. 12 12
640 870.82 humidity 70 1440 > th dose independent sin 22 NA
670 871.35 radiation 10 1440 < th dose dependent sin 22 NA
711 872.19 humidity 50 720 > th dose dependent rect. 16 16
731 872.64 radiation 10 1440 < th dose dependent rect. 8 16
743 872.79 radiation 10 1440 < th dose dependent rect. 8 12
746 872.83 radiation 10 1440 < th dose dependent rect. 8 19
760 873.06 radiation 20 1440 < th dose dependent rect. 11 20
768 873.27 humidity 50 1440 > th dose dependent no NA NA
820 874.13 humidity 90 1440 < th dose dependent sin 1 NA
848 874.32 humidity 50 1440 > th dose dependent rect. 18 23
875 874.74 humidity 50 1440 > th dose dependent rect. 11 13
884 874.82 humidity 50 1440 > th dose dependent sin 23 NA
909 874.98 humidity 70 1440 < th dose independent rect. 9 6