Os04g0686700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Kelch repeat containing protein.
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Os04g0686700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Kelch repeat containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.62 | 0.247 | 10.6 | 1.32 | 0.114 | -0.317 | -0.0129 | 3.78 | 0.0549 | 9.41 | 25.36 | 785 | -- | -- |
| 30.98 | 0.261 | 10.7 | 0.686 | 0.155 | 0.0712 | -0.429 | -- | -0.108 | 8.55 | 21.58 | 2202 | -- | -- |
| 27.51 | 0.244 | 10.6 | 1.36 | 0.114 | -0.377 | -- | 4.34 | 0.0499 | 9.61 | 26.1 | 790 | -- | -- |
| 31.46 | 0.263 | 10.7 | 0.661 | 0.159 | 0.123 | -- | -- | -0.118 | 7.76 | 19.88 | 2138 | -- | -- |
| 28.11 | 0.247 | 10.6 | 1.42 | -- | -0.466 | -- | 4.51 | 0.0651 | -- | 25.97 | 801 | -- | -- |
| 31.08 | 0.261 | 10.7 | 0.701 | 0.156 | -- | -0.425 | -- | -0.0963 | 8.97 | -- | -- | -- | -- |
| 31.69 | 0.264 | 10.7 | 0.687 | 0.158 | -- | -- | -- | -0.0967 | 8.86 | -- | -- | -- | -- |
| 32.75 | 0.268 | 10.7 | 0.677 | -- | 0.203 | -- | -- | -0.0878 | -- | 30.1 | 4258 | -- | -- |
| 34.01 | 0.272 | 10.8 | -- | 0.165 | 0.472 | -- | -- | -0.345 | 9.08 | 20.1 | 47520 | -- | -- |
| 33.12 | 0.269 | 10.7 | 0.687 | -- | -- | -- | -- | -0.0956 | -- | -- | -- | -- | -- |
| 44.12 | 0.311 | 10.7 | -- | 0.16 | -- | -- | -- | -0.173 | 8.54 | -- | -- | -- | -- |
| 34.75 | 0.275 | 10.8 | -- | -- | 0.45 | -- | -- | -0.246 | -- | 33.09 | 47520 | -- | -- |
| 45.56 | 0.315 | 10.7 | -- | -- | -- | -- | -- | -0.172 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.89 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 4 |
| 4 | 26.92 | humidity | 80 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 7 | 26.92 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 8 |
| 39 | 27.00 | humidity | 80 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 53 | 27.04 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 57 | 27.05 | humidity | 80 | 14400 | < th | dose dependent | rect. | 4 | 2 |
| 79 | 27.10 | wind | 1 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 83 | 27.13 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 90 | 27.14 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 95 | 27.16 | temperature | 20 | 1440 | > th | dose dependent | sin | 12 | NA |
| 128 | 27.26 | wind | 1 | 43200 | < th | dose independent | rect. | 19 | 7 |
| 156 | 27.34 | wind | 1 | 43200 | > th | dose independent | rect. | 19 | 7 |
| 162 | 27.37 | wind | 1 | 14400 | > th | dose independent | rect. | 9 | 3 |
| 179 | 27.42 | temperature | 25 | 1440 | < th | dose independent | rect. | 20 | 1 |
| 186 | 27.44 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 214 | 27.51 | wind | 9 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 218 | 27.51 | wind | 1 | 43200 | < th | dose dependent | rect. | 20 | 2 |
| 221 | 27.52 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 12 |
| 225 | 27.53 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 1 |
| 227 | 27.53 | wind | 1 | 14400 | < th | dose independent | rect. | 9 | 3 |
| 228 | 27.53 | wind | 3 | 14400 | < th | dose dependent | rect. | 8 | 5 |
| 232 | 27.54 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 235 | 27.54 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 10 |
| 236 | 27.54 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 10 |
| 238 | 27.55 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 279 | 27.62 | wind | 3 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 282 | 27.62 | temperature | 25 | 720 | > th | dose dependent | rect. | 23 | 20 |
| 284 | 27.63 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 290 | 27.63 | temperature | 25 | 720 | > th | dose dependent | rect. | 1 | 18 |
| 307 | 27.65 | temperature | 25 | 720 | > th | dose dependent | rect. | 5 | 14 |
| 323 | 27.66 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 22 |
| 326 | 27.67 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 5 |
| 337 | 27.68 | temperature | 20 | 1440 | > th | dose independent | rect. | 24 | 6 |
| 367 | 27.70 | wind | 1 | 43200 | > th | dose independent | rect. | 19 | 3 |
| 387 | 27.71 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 4 |
| 397 | 27.72 | wind | 9 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 412 | 27.73 | wind | 3 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 435 | 27.74 | wind | 1 | 43200 | < th | dose dependent | rect. | 16 | 10 |
| 448 | 27.74 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 23 |
| 450 | 27.75 | temperature | 25 | 4320 | > th | dose independent | rect. | 24 | 1 |
| 451 | 27.75 | wind | 9 | 14400 | < th | dose independent | rect. | 10 | 4 |
| 455 | 27.75 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 471 | 27.75 | temperature | 25 | 720 | > th | dose dependent | rect. | 6 | 21 |
| 482 | 27.76 | temperature | 25 | 4320 | < th | dose independent | rect. | 24 | 1 |
| 487 | 27.76 | temperature | 25 | 720 | > th | dose dependent | sin | 23 | NA |
| 556 | 27.79 | temperature | 25 | 720 | > th | dose dependent | rect. | 11 | 23 |
| 576 | 27.81 | temperature | 20 | 1440 | > th | dose independent | sin | 12 | NA |
| 620 | 27.83 | wind | 7 | 14400 | > th | dose dependent | rect. | 10 | 4 |
| 633 | 27.84 | wind | 3 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 637 | 27.84 | wind | 9 | 14400 | > th | dose independent | rect. | 9 | 5 |
| 647 | 27.84 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 2 |
| 650 | 27.84 | wind | 1 | 43200 | < th | dose dependent | rect. | 19 | 7 |
| 654 | 27.85 | wind | 1 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 680 | 27.86 | temperature | 20 | 1440 | < th | dose independent | sin | 12 | NA |
| 691 | 27.86 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 742 | 27.89 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 1 |
| 760 | 27.90 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 11 | 18 |
| 770 | 27.90 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 9 |
| 774 | 27.91 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 821 | 27.92 | wind | 9 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 833 | 27.93 | temperature | 25 | 1440 | > th | dose independent | rect. | 17 | 5 |
| 836 | 27.93 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 7 |
| 931 | 27.96 | wind | 3 | 14400 | < th | dose independent | rect. | 6 | 8 |
| 943 | 27.96 | wind | 3 | 43200 | < th | dose dependent | rect. | 21 | 7 |
| 966 | 27.97 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 16 | 13 |