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Os04g0686600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.35 (0.019) R2 : 0.0134
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0995 (0.04) R2dN8 : 0.0173 R2N8 : 0.0134
σ : 0.358
deviance : 58.87
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
29.16 0.254 9.38 -0.529 0.385 -0.66 -0.157 -0.935 -0.0353 18.4 29.7 10 -- --
30.41 0.259 9.4 -0.681 0.39 -0.677 -0.0855 -- -0.0679 18.5 30.96 12 -- --
29.22 0.252 9.38 -0.53 0.383 -0.662 -- -0.922 -0.037 18.5 29.7 10 -- --
30.37 0.257 9.4 -0.684 0.389 -0.674 -- -- -0.074 18.5 30.4 9 -- --
34.38 0.273 9.38 -0.599 -- -0.952 -- -0.94 -0.0668 -- 32.54 218 -- --
36.3 0.282 9.37 -0.526 0.529 -- 0.0554 -- 0.0523 17 -- -- -- --
36.31 0.282 9.37 -0.526 0.529 -- -- -- 0.0526 17 -- -- -- --
35.14 0.276 9.4 -0.755 -- -1.03 -- -- -0.0997 -- 49.77 252 -- --
41.41 0.301 9.37 -- 0.451 -0.386 -- -- 0.0497 17.7 30.5 2 -- --
51.04 0.334 9.36 -0.545 -- -- -- -- 0.039 -- -- -- -- --
43.59 0.309 9.36 -- 0.538 -- -- -- 0.111 16.9 -- -- -- --
49.14 0.326 9.37 -- -- -0.78 -- -- 0.0123 -- 51.13 251 -- --
58.87 0.358 9.35 -- -- -- -- -- 0.0995 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 28.18 temperature 30 10 < th dose dependent rect. 11 19
4 28.33 temperature 30 90 < th dose dependent rect. 9 22
30 29.03 temperature 10 270 > th dose dependent rect. 3 22
38 29.14 temperature 20 10 > th dose dependent rect. 23 23
40 29.18 temperature 30 10 < th dose dependent no NA NA
44 29.20 temperature 30 10 < th dose dependent rect. 1 23
46 29.22 temperature 30 10 < th dose dependent rect. 15 23
54 29.28 temperature 30 10 < th dose dependent rect. 19 23
55 29.29 temperature 20 270 > th dose dependent rect. 14 22
63 29.36 temperature 30 10 < th dose dependent rect. 17 23
66 29.37 temperature 30 30 < th dose dependent rect. 13 23
68 29.41 temperature 20 90 > th dose dependent rect. 16 23
69 29.41 temperature 20 10 > th dose dependent rect. 21 23
89 29.49 temperature 30 90 < th dose dependent rect. 23 23
101 29.59 temperature 30 10 < th dose dependent rect. 3 23
102 29.60 temperature 20 10 > th dose dependent rect. 23 21
115 29.67 temperature 30 10 < th dose dependent rect. 21 23
129 29.73 temperature 30 90 < th dose dependent rect. 21 23
130 29.74 temperature 20 10 > th dose dependent no NA NA
138 29.77 temperature 20 90 > th dose dependent no NA NA
149 29.81 temperature 20 10 > th dose dependent rect. 3 23
180 29.93 temperature 20 10 > th dose dependent rect. 14 23
181 29.93 temperature 30 10 < th dose dependent rect. 23 23
183 29.94 temperature 20 10 > th dose dependent rect. 1 23
184 29.95 temperature 10 10 > th dose dependent no NA NA
194 29.96 temperature 20 10 > th dose dependent rect. 17 23
195 29.97 temperature 10 90 > th dose dependent no NA NA
197 29.97 temperature 10 720 > th dose dependent rect. 21 21
284 30.22 temperature 20 720 > th dose dependent rect. 21 21
293 30.23 temperature 20 10 > th dose dependent rect. 6 20
299 30.26 temperature 25 90 > th dose independent rect. 6 13
357 30.39 temperature 25 720 < th dose dependent rect. 6 15
384 30.44 temperature 25 90 > th dose independent rect. 23 20
385 30.44 temperature 10 720 > th dose dependent rect. 3 15
392 30.45 temperature 30 90 < th dose dependent rect. 10 13
395 30.46 temperature 25 270 < th dose independent rect. 9 10
454 30.54 temperature 25 10 > th dose independent rect. 5 15
484 30.57 temperature 30 10 < th dose dependent rect. 5 23
493 30.59 temperature 20 10 > th dose dependent rect. 6 14
502 30.60 temperature 30 10 < th dose dependent sin 20 NA
527 30.63 temperature 25 720 < th dose dependent sin 23 NA
570 30.67 temperature 20 10 > th dose dependent rect. 6 16
579 30.68 temperature 25 90 > th dose independent rect. 1 18
587 30.69 temperature 25 270 < th dose independent rect. 7 22
589 30.69 temperature 20 720 > th dose dependent rect. 21 14
606 30.71 temperature 25 1440 > th dose independent rect. 11 1
608 30.71 temperature 30 90 < th dose dependent rect. 10 11
633 30.74 temperature 20 720 > th dose dependent sin 4 NA
664 30.77 temperature 25 1440 > th dose independent rect. 16 3
665 30.77 temperature 25 1440 < th dose independent rect. 16 3
675 30.78 temperature 30 10 < th dose dependent rect. 11 10
685 30.79 temperature 30 10 < th dose dependent rect. 11 12
711 30.81 temperature 25 270 > th dose independent rect. 5 17
758 30.84 temperature 30 720 < th dose dependent rect. 2 19
772 30.85 temperature 25 10 > th dose independent rect. 1 19
865 30.92 temperature 20 10 > th dose dependent rect. 3 17
961 30.98 temperature 25 270 < th dose independent sin 23 NA
963 30.98 temperature 25 1440 > th dose independent rect. 10 12