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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0686500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.91 (0.0334) R2 : 0.338
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.09 (0.0845) R2dC : 0.242 R2C : 0.228
β3 : 1.96 (0.23) R2dE : 0.112 R2E : 0.0948
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0251 (0.0718) R2dN8 : 0.000245 R2N8 : -0.0035
σ : 0.624
deviance : 177.74
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_____
C
peak time of C : 20
E
wheather : wind
threshold : 1.684
memory length : 29
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 2.63
open length of G : 0.842

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
159.34 0.593 3.9 0.785 1.09 2.28 1.37 4.28 0.0496 20 1.461 30 2.65 0.844
160.04 0.594 3.89 0.717 1.09 1.94 1.36 -- 0.0504 20 1.668 30 2.62 0.84
164.91 0.603 3.9 0.746 1.09 2.29 -- 4.14 0.0497 20 1.524 29 2.62 0.865
165.57 0.603 3.89 0.68 1.09 1.96 -- -- 0.0504 20 1.673 28 2.64 0.835
229.75 0.71 3.87 0.735 -- 2.17 -- 4.15 0.0445 -- 1.524 29 2.62 0.865
187.13 0.641 3.86 0.72 1.06 -- 1.36 -- 0.198 20.4 -- -- -- --
192.97 0.651 3.86 0.678 1.06 -- -- -- 0.198 20.4 -- -- -- --
230.41 0.71 3.86 0.669 -- 1.84 -- -- 0.0452 -- 1.673 28 2.64 0.835
177.74 0.624 3.91 -- 1.09 1.96 -- -- -0.0251 20 1.684 29 2.63 0.842
255.51 0.747 3.83 0.672 -- -- -- -- 0.187 -- -- -- -- --
205.08 0.67 3.88 -- 1.06 -- -- -- 0.123 20.5 -- -- -- --
242.21 0.727 3.88 -- -- 1.85 -- -- -0.0293 -- 0.9507 28 2.64 0.839
267.43 0.763 3.85 -- -- -- -- -- 0.113 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 159.53 wind 1.0 30 < th dose independent rect. 2 1
2 159.56 atmosphere 1005.0 30 > th dose dependent rect. 2 1
3 159.67 wind 1.0 30 < th dose dependent rect. 2 1
8 160.06 atmosphere 1005.0 30 > th dose independent rect. 2 1
11 160.08 temperature 20.0 30 > th dose dependent rect. 2 1
13 160.12 temperature 25.0 30 < th dose independent rect. 2 1
19 160.20 humidity 80.0 30 > th dose independent rect. 2 1
20 160.21 temperature 20.0 30 > th dose independent rect. 2 1
21 160.22 humidity 70.0 30 > th dose dependent rect. 2 1
28 160.26 temperature 10.0 30 > th dose independent rect. 2 1
31 160.26 humidity 50.0 30 > th dose independent rect. 2 1
34 160.26 atmosphere 995.0 30 > th dose independent rect. 2 1
35 160.26 atmosphere 1010.0 30 < th dose independent rect. 2 1
37 160.26 radiation 1.0 30 < th dose independent rect. 2 1
42 160.26 precipitation 0.1 30 < th dose independent rect. 2 1
43 160.26 temperature 10.0 30 > th dose independent rect. 3 23
44 160.26 radiation 1.0 30 < th dose dependent rect. 2 1
49 160.26 precipitation 0.1 30 < th dose dependent rect. 2 1
52 160.58 temperature 30.0 30 < th dose dependent rect. 2 1
53 160.72 atmosphere 1015.0 30 < th dose dependent rect. 2 1
57 161.53 wind 9.0 30 < th dose independent rect. 3 23
60 161.70 wind 1.0 30 > th dose independent rect. 2 1
105 163.47 precipitation 0.1 30 < th dose independent rect. 3 23
106 163.47 precipitation 0.1 30 < th dose dependent rect. 3 23
110 164.24 atmosphere 995.0 30 > th dose independent rect. 3 23
113 164.57 radiation 1.0 43200 < th dose dependent rect. 3 1
129 165.95 wind 9.0 1440 < th dose independent rect. 3 1
130 165.95 temperature 10.0 1440 > th dose independent rect. 3 1
133 165.95 temperature 30.0 1440 < th dose independent rect. 3 1
137 165.95 humidity 50.0 1440 > th dose independent rect. 3 1
146 165.95 atmosphere 995.0 1440 > th dose independent rect. 3 1
147 165.95 radiation 1.0 1440 < th dose independent rect. 3 1
167 165.95 temperature 10.0 1440 > th dose independent rect. 4 23
170 165.95 radiation 1.0 1440 < th dose dependent rect. 3 1
192 167.88 temperature 10.0 30 > th dose dependent rect. 3 23
200 169.74 atmosphere 1015.0 30 < th dose independent rect. 3 23
206 170.56 humidity 50.0 30 > th dose independent rect. 3 23
211 171.18 humidity 90.0 90 < th dose independent rect. 2 1
212 171.42 radiation 20.0 720 > th dose independent rect. 16 15
214 171.56 radiation 20.0 720 > th dose independent rect. 16 1
267 173.51 wind 1.0 10 < th dose independent rect. 15 12
271 173.61 wind 1.0 10 < th dose independent rect. 17 10
273 173.64 wind 1.0 10 < th dose independent rect. 24 3
275 173.66 radiation 10.0 720 > th dose dependent rect. 16 1
276 173.70 wind 1.0 10 < th dose independent rect. 21 6
350 175.32 wind 1.0 10 < th dose independent rect. 6 21
384 175.98 temperature 10.0 30 > th dose dependent rect. 10 16
388 176.13 wind 9.0 720 < th dose independent rect. 15 8
394 176.34 temperature 20.0 720 > th dose dependent rect. 3 1
452 176.86 temperature 20.0 10 > th dose dependent rect. 23 3
459 176.95 wind 1.0 10 > th dose independent rect. 10 21
463 177.00 wind 1.0 10 > th dose independent rect. 10 19
464 177.01 atmosphere 1015.0 1440 < th dose independent rect. 3 1
468 177.04 temperature 20.0 30 > th dose independent rect. 10 16
483 177.26 temperature 30.0 30 < th dose independent rect. 3 23
489 177.48 temperature 10.0 720 > th dose independent rect. 15 8
490 177.48 temperature 10.0 720 > th dose independent rect. 23 16
514 177.93 atmosphere 1015.0 720 < th dose independent rect. 3 8
517 178.01 temperature 25.0 10 > th dose independent rect. 23 17
518 178.01 temperature 15.0 30 > th dose dependent rect. 22 9
519 178.06 temperature 20.0 10 > th dose independent rect. 23 3
523 178.11 wind 1.0 10 > th dose independent rect. 8 23
528 178.15 temperature 25.0 10 < th dose independent rect. 2 10
529 178.19 humidity 90.0 720 < th dose independent rect. 1 2
546 178.41 temperature 10.0 720 > th dose independent rect. 3 8
547 178.41 atmosphere 995.0 720 > th dose independent rect. 3 8
548 178.41 temperature 10.0 720 > th dose independent rect. 11 16
550 178.43 humidity 70.0 270 < th dose dependent rect. 19 12
553 178.48 radiation 10.0 30 < th dose dependent rect. 3 23
555 178.49 temperature 15.0 30 > th dose dependent rect. 3 13
561 178.58 wind 9.0 30 < th dose dependent rect. 3 23
567 178.66 temperature 20.0 10 > th dose dependent rect. 23 17
603 178.86 humidity 70.0 270 < th dose dependent rect. 19 1
617 178.88 humidity 70.0 270 < th dose independent rect. 19 1
634 178.92 temperature 20.0 90 > th dose dependent rect. 22 17
637 178.98 radiation 1.0 30 < th dose independent rect. 3 23
638 178.99 wind 9.0 720 < th dose independent rect. 3 8
655 179.10 wind 1.0 10 > th dose independent sin 16 NA
660 179.12 temperature 10.0 10 > th dose dependent rect. 8 23
663 179.14 wind 9.0 720 < th dose independent rect. 11 16
664 179.14 temperature 15.0 10 > th dose dependent rect. 10 21
667 179.16 wind 1.0 10 > th dose independent rect. 12 17
704 179.26 wind 1.0 10 > th dose independent rect. 22 9
708 179.27 temperature 20.0 30 > th dose independent rect. 22 9
711 179.29 atmosphere 1015.0 43200 > th dose dependent rect. 12 2
714 179.30 temperature 20.0 30 > th dose independent rect. 10 21
716 179.31 wind 1.0 43200 < th dose dependent rect. 6 1
718 179.32 atmosphere 1015.0 43200 > th dose dependent rect. 11 4
727 179.34 temperature 30.0 10 < th dose dependent rect. 2 22
744 179.43 wind 1.0 10 > th dose independent rect. 22 7
747 179.44 wind 1.0 10 > th dose independent rect. 10 16
748 179.44 atmosphere 1015.0 43200 > th dose dependent rect. 10 8
757 179.49 atmosphere 1015.0 43200 < th dose independent rect. 14 2
758 179.49 atmosphere 1015.0 43200 < th dose independent rect. 13 4
760 179.49 atmosphere 1015.0 43200 < th dose independent rect. 12 7
764 179.50 atmosphere 1015.0 43200 > th dose independent rect. 13 3
765 179.50 atmosphere 1015.0 43200 > th dose independent rect. 12 6
782 179.55 wind 1.0 10 > th dose independent rect. 24 5
815 179.62 wind 1.0 30 > th dose dependent rect. 2 1
833 179.66 precipitation 0.1 30 < th dose independent rect. 2 8
834 179.66 precipitation 0.1 30 < th dose dependent rect. 2 8
851 179.72 wind 9.0 720 < th dose independent rect. 15 16
852 179.72 atmosphere 1015.0 43200 > th dose dependent sin 20 NA
873 179.76 temperature 20.0 30 > th dose independent rect. 12 14
874 179.76 radiation 40.0 30 < th dose dependent rect. 2 11
903 179.79 temperature 10.0 30 > th dose dependent rect. 8 18
934 179.83 temperature 30.0 10 < th dose dependent rect. 2 10
937 179.83 wind 3.0 10 < th dose dependent rect. 12 15