Os04g0684000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0684000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 243.14 | 0.733 | 6.08 | 0.286 | 0.62 | 2 | 0.388 | 1.75 | -1.01 | 9.01 | 22.11 | 1435 | -- | -- |
| 250.1 | 0.737 | 6.03 | 0.812 | 0.586 | 1.92 | 0.422 | -- | -0.925 | 9.09 | 22.3 | 1451 | -- | -- |
| 243.6 | 0.727 | 6.08 | 0.307 | 0.622 | 2 | -- | 1.74 | -1.01 | 9.1 | 22.11 | 1460 | -- | -- |
| 250.43 | 0.737 | 6.02 | 0.836 | 0.616 | 1.95 | -- | -- | -0.871 | 9.11 | 22.2 | 1455 | -- | -- |
| 251.39 | 0.738 | 6.1 | 0.271 | -- | 1.98 | -- | 1.77 | -1.03 | -- | 22 | 907 | -- | -- |
| 392.49 | 0.929 | 6.17 | 0.127 | 0.627 | -- | 0.293 | -- | -1.53 | 9.61 | -- | -- | -- | -- |
| 392.81 | 0.928 | 6.17 | 0.139 | 0.625 | -- | -- | -- | -1.53 | 9.66 | -- | -- | -- | -- |
| 258.88 | 0.749 | 6.04 | 0.787 | -- | 1.9 | -- | -- | -0.896 | -- | 22.1 | 846 | -- | -- |
| 266.6 | 0.76 | 6.06 | -- | 0.617 | 1.77 | -- | -- | -0.985 | 8.97 | 22.4 | 1425 | -- | -- |
| 415.98 | 0.953 | 6.19 | 0.133 | -- | -- | -- | -- | -1.52 | -- | -- | -- | -- | -- |
| 393.31 | 0.928 | 6.17 | -- | 0.625 | -- | -- | -- | -1.54 | 9.65 | -- | -- | -- | -- |
| 272.32 | 0.769 | 6.07 | -- | -- | 1.69 | -- | -- | -1.02 | -- | 22.38 | 837 | -- | -- |
| 416.44 | 0.953 | 6.19 | -- | -- | -- | -- | -- | -1.54 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 248.82 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 3 |
| 27 | 253.27 | temperature | 25 | 1440 | < th | dose dependent | rect. | 15 | 12 |
| 41 | 253.69 | temperature | 25 | 1440 | < th | dose dependent | sin | 15 | NA |
| 47 | 254.01 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 7 |
| 138 | 256.86 | temperature | 25 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 145 | 256.93 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 174 | 257.74 | temperature | 10 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 187 | 258.18 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 5 |
| 250 | 259.35 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 280 | 259.72 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 6 |
| 288 | 259.78 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 9 |
| 309 | 259.90 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 330 | 260.03 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 334 | 260.05 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 344 | 260.10 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 23 |
| 485 | 260.84 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 502 | 261.01 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 2 |
| 575 | 261.49 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 2 |
| 594 | 261.58 | temperature | 20 | 1440 | > th | dose dependent | sin | 11 | NA |